RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CCDC84Q86UT8 332 aaPredicted RBP8.98□□□□□ -0.97
USP54-208ENST00000461520 DNAJB8Q8NHS0 232 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 OPTNQ96CV9 577 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 HOOK2Q96ED9 719 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 RHOVQ96L33 236 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 TMEM74Q96NL1 305 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 COPRSQ9NQ92 184 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 ADAM30Q9UKF2 790 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 LAMB1P07942 1786 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 BPNT1O95861 308 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 C8AP07357 584 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 GNAI3P08754 354 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 FAM160A1Q05DH4 1040 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 ATP2B3Q16720 1220 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 ZNF648Q5T619 568 aaPredicted RBP8.97□□□□□ -0.97
USP54-208ENST00000461520 INTS3Q68E01 1043 aaKnown RBP8.97□□□□□ -0.97
USP54-208ENST00000461520 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP54-208ENST00000461520 GATAD2BQ8WXI9 593 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 MEIS3Q99687 375 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 SIL1Q9H173 461 aa8.97□□□□□ -0.97
USP54-208ENST00000461520 GNL3LQ9NVN8 582 aaKnown RBP8.97□□□□□ -0.97
USP54-208ENST00000461520 LRRFIP2Q9Y608 721 aaKnown RBP8.97□□□□□ -0.97
USP54-208ENST00000461520 WASH4PA8MWX3 477 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 IPO8O15397 1037 aaKnown RBP8.96□□□□□ -0.98
USP54-208ENST00000461520 ERCC3P19447 782 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 KIR3DL1P43629 444 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 GTF2A2P52657 109 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 CACNB3P54284 484 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 VGLL4Q14135 290 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 FYB2Q5VWT5 728 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 DCAF15Q66K64 600 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 FAM13CQ8NE31 585 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 PPP1R13LQ8WUF5 828 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 PTPN18Q99952 460 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 RSRP1Q9BUV0 290 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 KRTAP9-9Q9BYP9 154 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 KRTAP9-4Q9BYQ2 154 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 DENND2AQ9ULE3 1009 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 CEP131Q9UPN4 1083 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 TRIM17Q9Y577 477 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 SALL1Q9NSC2 1324 aa8.96□□□□□ -0.98
USP54-208ENST00000461520 RPAP1Q9BWH6 1393 aaPredicted RBP8.96□□□□□ -0.98
USP54-208ENST00000461520 RBBP6Q7Z6E9 1792 aaKnown RBP8.96□□□□□ -0.98
USP54-208ENST00000461520 KIAA0100Q14667 2235 aaKnown RBP8.95□□□□□ -0.98
USP54-208ENST00000461520 PRDX5P30044 214 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 ETV3P41162 512 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 CRHR2Q13324 411 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 MTX1Q13505 466 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 DIEXFQ68CQ4 756 aaKnown RBP8.95□□□□□ -0.98
USP54-208ENST00000461520 THAP5Q7Z6K1 395 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 ZSWIM9Q86XI8 627 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 ZGPATQ8N5A5 531 aaKnown RBP8.95□□□□□ -0.98
USP54-208ENST00000461520 FAM151AQ8WW52 585 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 TMEM40Q8WWA1 233 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 GCC1Q96CN9 775 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 ERO1AQ96HE7 468 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 COX4I2Q96KJ9 171 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 Q96M66 194 aa8.95□□□□□ -0.98
USP54-208ENST00000461520 PA2G4Q9UQ80 394 aaKnown RBP8.95□□□□□ -0.98
USP54-208ENST00000461520 CCL15-CCL14A0A0B4J2E2 113 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 SRGAP3O43295 1099 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 TRIM27P14373 513 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 PHKA1P46020 1223 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 SP3Q02447 781 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 CCL15Q16663 113 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 ATF7IPQ6VMQ6 1270 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 OTOP1Q7RTM1 612 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 ERO1BQ86YB8 467 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 GOLM1Q8NBJ4 401 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 FBXO27Q8NI29 283 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 BRI3BPQ8WY22 251 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 WRNIP1Q96S55 665 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 C19orf73Q9NVV2 129 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 POLR3KQ9Y2Y1 108 aaPredicted RBP8.94□□□□□ -0.98
USP54-208ENST00000461520 PDS5AQ29RF7 1337 aaKnown RBP8.94□□□□□ -0.98
USP54-208ENST00000461520 HTTP42858 3142 aa8.94□□□□□ -0.98
USP54-208ENST00000461520 OTOFQ9HC10 1997 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 WDHD1O75717 1129 aaPredicted RBP8.93□□□□□ -0.98
USP54-208ENST00000461520 CETPP11597 493 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 TIMM10P62072 90 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 PPATQ06203 517 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 PPIL2Q13356 520 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 KCNMB1Q16558 191 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 HABP4Q5JVS0 413 aaKnown RBP8.93□□□□□ -0.98
USP54-208ENST00000461520 TMEM201Q5SNT2 666 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 SNAP47Q5SQN1 464 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 CDC42EP5Q6NZY7 148 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 ZKSCAN4Q969J2 545 aaPredicted RBP8.93□□□□□ -0.98
USP54-208ENST00000461520 ZNF341Q9BYN7 854 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 ZCCHC17Q9NP64 241 aaKnown RBP8.93□□□□□ -0.98
USP54-208ENST00000461520 USP40Q9NVE5 1235 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 KBTBD4Q9NVX7 518 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 REV1Q9UBZ9 1251 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 CENPFP49454 3210 aa8.93□□□□□ -0.98
USP54-208ENST00000461520 MKI67P46013 3256 aaKnown RBP8.92□□□□□ -0.98
USP54-208ENST00000461520 A0A1B0GUL7 405 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 ZNF503-AS2A6NEH8 195 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 CHURC1-FNTBB4DL54 471 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 BCAR3O75815 825 aa8.92□□□□□ -0.98
USP54-208ENST00000461520 GNAI2P04899 355 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms