RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 CCDC160A6NGH7 325 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 GAS2O43903 313 aaKnown RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 ZFXP17010 805 aaPredicted RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 CCNE1P24864 410 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 QARSP47897 775 aaKnown RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 KIAA1755Q5JYT7 1200 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 ZNF653Q96CK0 615 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 VPS39Q96JC1 886 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 TRIM45Q9H8W5 580 aaPredicted RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 ZSWIM5Q9P217 1185 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 DIP2CQ9Y2E4 1556 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 CEP170BQ9Y4F5 1589 aaPredicted RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 ABCA6Q8N139 1617 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 STX1BP61266 288 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 SNRPFP62306 86 aaKnown RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 HHIPL2Q6UWX4 724 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 YAF2Q8IY57 180 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 KCTD6Q8NC69 237 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 MORC4Q8TE76 937 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 NUDCD1Q96RS6 583 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 EPS15L1Q9UBC2 864 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 DDX41Q9UJV9 622 aaKnown RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 TMEM247A6NEH6 219 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 CHEK2O96017 543 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 IER5Q5VY09 327 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 BSPRYQ5W0U4 402 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 TBC1D9BQ66K14 1250 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 PARD3BQ8TEW8 1205 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 CCDC124Q96CT7 223 aaKnown RBP9.21□□□□□ -0.93
PTPN3-204ENST00000446349 SLITRK6Q9H5Y7 841 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 NDUFB9Q9Y6M9 179 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 PNPLA7Q6ZV29 1317 aa9.21□□□□□ -0.93
PTPN3-204ENST00000446349 PTPRUQ92729 1446 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 RALAP11233 206 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 STAT3P40763 770 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 PAPOLAP51003 745 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 PFKFB3Q16875 520 aaPredicted RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 CCDC13Q8IYE1 715 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 CYP26B1Q9NR63 512 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 RSPH14Q9UHP6 348 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 PCDHA7Q9UN72 937 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 SRGAP2CP0DJJ0 459 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 RNASE9P60153 205 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 PSMC5P62195 406 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 PROSER3Q2NL68 480 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TMTC3Q6ZXV5 915 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 KLHL7Q8IXQ5 586 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 AGBL3Q8NEM8 1001 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 KLHL14Q9P2G3 628 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 SGK1O00141 431 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 CYP27B1O15528 508 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TMCC1O94876 653 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TJP3O95049 919 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 EIF2AK2P19525 551 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 RBBP5Q15291 538 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 SF3B3Q15393 1217 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 SLC10A5Q5PT55 438 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 UNC13DQ70J99 1090 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 HOMEZQ8IX15 550 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 RBM41Q96IZ5 413 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 ZNF512BQ96KM6 892 aaPredicted RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TUFT1Q9NNX1 390 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 SLC38A7Q9NVC3 462 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 NDUFAB1O14561 156 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TFDP2Q14188 446 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TAF11Q15544 211 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TTC23LQ6PF05 361 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TMEM35BQ8NCS4 154 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 HEXIM2Q96MH2 286 aaKnown RBP9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TEX13BQ9BXU2 312 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 ASNSD1Q9NWL6 643 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 TLK1Q9UKI8 766 aa9.21□□□□□ -0.94
PTPN3-204ENST00000446349 ZNF131P52739 623 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 TMEM51Q9NW97 253 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 SPATA31A1Q5TZJ5 1347 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 MYBL1P10243 752 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 GRM4Q14833 912 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 SNX17Q15036 470 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 TSSK1BQ9BXA7 367 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 RRN3P2A6NIE6 340 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 KIF3CO14782 793 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 ALDH1A1P00352 501 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 SMARCA1P28370 1054 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 PMLP29590 882 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 PPP2R5CQ13362 524 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 DBN1Q16643 649 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 TRMT44Q8IYL2 757 aaKnown RBP9.2□□□□□ -0.94
PTPN3-204ENST00000446349 GANCQ8TET4 914 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 TNIP3Q96KP6 325 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 XPO4Q9C0E2 1151 aaKnown RBP9.2□□□□□ -0.94
PTPN3-204ENST00000446349 FAM96AQ9H5X1 160 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 INO80Q9ULG1 1556 aaPredicted RBP9.2□□□□□ -0.94
PTPN3-204ENST00000446349 TTC4O95801 387 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 CYP21A2P08686 494 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 GPC3P51654 580 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 KIRREL3Q8IZU9 778 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 DNAAF3Q8N9W5 541 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 SH3RF3Q8TEJ3 882 aaPredicted RBP9.2□□□□□ -0.94
PTPN3-204ENST00000446349 HDAC11Q96DB2 347 aa9.2□□□□□ -0.94
PTPN3-204ENST00000446349 EDC3Q96F86 508 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms