RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TCP11L2Q8N4U5 519 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PCYOX1LQ8NBM8 494 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 GMCL1Q96IK5 515 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 KATNAL1Q9BW62 490 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 BOCQ9BWV1 1114 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CELF4Q9BZC1 486 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ADAM19Q9H013 955 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC86Q9H6F5 360 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ZWILCHQ9H900 591 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CD248Q9HCU0 757 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF277Q9NRM2 450 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT82Q9NSB4 513 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 DACT1Q9NYF0 836 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SOX13Q9UN79 622 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 TRIM33Q9UPN9 1127 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SF3B6Q9Y3B4 125 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 TRAF5O00463 557 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MEIS1O00470 390 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT32Q14532 448 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ADCK5Q3MIX3 580 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 HAUS3Q68CZ6 603 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ISM2Q6H9L7 571 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CYB5RLQ6IPT4 315 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ENOSF1Q7L5Y1 443 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 WAPLQ7Z5K2 1190 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 RPAINQ86UA6 219 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 FIBCD1Q8N539 461 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MGARPQ8TDB4 240 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 NELL1Q92832 810 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 RADILQ96JH8 1075 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SMG9Q9H0W8 520 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC68Q9H2F9 335 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ARMT1Q9H993 441 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 UBN1Q9NPG3 1134 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ITGB1BP2Q9UKP3 347 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PADI4Q9UM07 663 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SETD1BQ9UPS6 1966 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM47E-STBD1D6RA91 191 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FYB1O15117 783 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 UBOX5O94941 541 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM200BP0CF97 657 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ATP1A3P13637 1013 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TIMP2P16035 220 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CLK1P49759 484 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ARL4CP56559 192 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TRPC3Q13507 836 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 POSTNQ15063 836 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 HIBCHQ6NVY1 386 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CYFIP1Q7L576 1253 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 GALNT5Q7Z7M9 940 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MCATQ8IVS2 390 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ARHGEF39Q8N4T4 335 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF713Q8N859 430 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC30A5Q8TAD4 765 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF507Q8TCN5 953 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM41AQ96HV5 264 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KCNJ15Q99712 375 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZFYVE21Q9BQ24 234 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PDGFDQ9GZP0 370 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 LMAN2LQ9H0V9 348 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 DNAJB12Q9NXW2 375 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TJP2Q9UDY2 1190 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC13A4Q9UKG4 626 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TMCC3Q9ULS5 477 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR34Q9UPC5 381 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC12A8A0AV02 714 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 APOL1O14791 398 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CD3EP07766 207 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 C5AR1P21730 350 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 UBA7P41226 1012 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CEBPAP49715 358 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KIF11P52732 1056 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC5A3P53794 718 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 BCAR1P56945 870 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ARF3P61204 181 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ARF1P84077 181 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 IRF9Q00978 393 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 C19orf57Q0VDD7 668 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SMAD1Q15797 465 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 LRCH2Q5VUJ6 765 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FRMD7Q6ZUT3 714 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 UBE2Q1Q7Z7E8 422 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KSR1Q8IVT5 923 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SIRT2Q8IXJ6 389 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 THEMISQ8N1K5 641 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CYB5D2Q8WUJ1 264 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ERCC4Q92889 916 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MTFMTQ96DP5 389 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MPHOSPH8Q99549 860 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CGRRF1Q99675 332 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PYM1Q9BRP8 204 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CNPPD1Q9BV87 410 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SORBS1Q9BX66 1292 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SENP6Q9GZR1 1112 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SIL1Q9H173 461 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ASCC2Q9H1I8 757 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CNNM1Q9NRU3 951 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 NFKBIL1Q9UBC1 381 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 HIF3AQ9Y2N7 669 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 GTPBP10A4D1E9 387 aaKnown RBP2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms