RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TBK1Q9UHD2 729 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 EPN1Q9Y6I3 576 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 CCDC88CQ9P219 2028 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ABCA9Q8IUA7 1624 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PLA2G4BP0C869 781 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 GRAPQ13588 217 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 RASGRF1Q13972 1273 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PHLDB3Q6NSJ2 640 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 TEX2Q8IWB9 1127 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 GRAPLQ8TC17 118 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MAGOHBQ96A72 148 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ECEL1O95672 775 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ASNSP08243 561 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MSH2P43246 934 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 KPNA2P52292 529 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 NSUN2Q08J23 767 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ALCAMQ13740 583 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PIDD1Q9HB75 910 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PAMP19021 973 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 TRIP13Q15645 432 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 APOBEC3FQ8IUX4 373 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 LRRC8AQ8IWT6 810 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 FBXO18Q8NFZ0 1043 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MMP19Q99542 508 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 LRRC7Q96NW7 1537 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PRAMEF22A3QJZ6 481 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ERVV-1B6SEH8 477 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 K7ERI5 159 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PLS3P13797 630 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PCGF5Q86SE9 256 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 CXorf38Q8TB03 319 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 RGPD8O14715 1765 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 PI16Q6UXB8 463 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 PIGOQ8TEQ8 1089 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 LSG1Q9H089 658 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ADCY1Q08828 1119 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF467Q7Z7K2 595 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 CFAP61Q8NHU2 1237 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ROBO2Q9HCK4 1378 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 TTI1O43156 1089 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 MXI1P50539 228 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 GNGT1P63211 74 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 TSPY1Q01534 308 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 KCTD16Q68DU8 428 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 TCP11Q8WWU5 503 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 PIGBQ92521 554 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 XAB2Q9HCS7 855 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 POLR3EQ9NVU0 708 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 MOSPD1Q9UJG1 213 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 CLTAP09496 248 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 SLC4A7Q9Y6M7 1214 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 SLMAPQ14BN4 828 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ENC1O14682 589 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 SURF1Q15526 300 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 P2RX5Q93086 422 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 USP17L5A8MUK1 530 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 PPP1R12AO14974 1030 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ZBED1O96006 694 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 PASD1Q8IV76 773 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 BAIAP2L1Q9UHR4 511 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 LRRD1A4D1F6 860 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 SH2B2O14492 632 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 NR5A1Q13285 461 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 ZKSCAN8Q15776 578 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 RWDD2AQ9UIY3 292 aa12.97□□□□□ -0.33
CCDC88A-207ENST00000436346 MYO3BQ8WXR4 1341 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 EXOC1LA0A1B0GW35 172 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 GPC4O75487 556 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 FAM160B2Q86V87 743 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 NDUFAF2Q8N183 169 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 ATP8A1Q9Y2Q0 1164 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF658Q5TYW1 1059 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 SCN4BQ8IWT1 228 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.96□□□□□ -0.333e-7■■■■□ 23.2
CCDC88A-207ENST00000436346 SUCLA2Q9P2R7 463 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 SUGT1Q9Y2Z0 365 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 PER1O15534 1290 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 KIAA1755Q5JYT7 1200 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 SLFN12LQ6IEE8 588 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 COPRSQ9NQ92 184 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF638Q14966 1978 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 PGRMC1O00264 195 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 TLK1Q9UKI8 766 aa12.96□□□□□ -0.33
CCDC88A-207ENST00000436346 CRKP46108 304 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 MFSD14CQ5VZR4 134 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 RHPN2Q8IUC4 686 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 DHX38Q92620 1227 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 COA1Q9GZY4 146 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 SPECC1L-ADORA2AF8WAN1 911 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 TCP1P17987 556 aaKnown RBP12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 C2orf54Q08AI8 447 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 TMEM179Q6ZVK1 233 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 TRIP11Q15643 1979 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 OVOS2A0A0G2JMS6 1433 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 OVOS2A0A0J9YW53 1432 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 OVOS2Q6IE36 1432 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 HIP1RO75146 1068 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 PPP6R3Q5H9R7 873 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 RSBN1LQ6PCB5 846 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 CCDC124Q96CT7 223 aaKnown RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms