RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 MARCH8Q5T0T0 291 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 B3GNT9Q6UX72 402 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 ZNF365Q70YC5 407 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 RPUSD2Q8IZ73 545 aaKnown RBP21.01■□□□□ 0.95
SHH-202ENST00000430104 BANK1Q8NDB2 785 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 SNX21Q969T3 373 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 TMEM60Q9H2L4 133 aa21.01■□□□□ 0.95
SHH-202ENST00000430104 FGBP02675 491 aa21■□□□□ 0.95
SHH-202ENST00000430104 CTSHP09668 335 aa21■□□□□ 0.95
SHH-202ENST00000430104 PPP2R5CQ13362 524 aa21■□□□□ 0.95
SHH-202ENST00000430104 TMEM240Q5SV17 173 aa21■□□□□ 0.95
SHH-202ENST00000430104 RDM1Q8NG50 284 aa21■□□□□ 0.95
SHH-202ENST00000430104 BBXQ8WY36 941 aaPredicted RBP21■□□□□ 0.95
SHH-202ENST00000430104 RNPC3Q96LT9 517 aaKnown RBP21■□□□□ 0.95
SHH-202ENST00000430104 FTOQ9C0B1 505 aaKnown RBP eCLIP21■□□□□ 0.95
SHH-202ENST00000430104 PCDHA12Q9UN75 941 aa21■□□□□ 0.95
SHH-202ENST00000430104 EVPLQ92817 2033 aa21■□□□□ 0.95
SHH-202ENST00000430104 IGSF9BQ9UPX0 1349 aa21■□□□□ 0.95
SHH-202ENST00000430104 VPS37CA5D8V6 355 aaPredicted RBP20.99■□□□□ 0.95
SHH-202ENST00000430104 ZNF862O60290 1169 aa20.99■□□□□ 0.95
SHH-202ENST00000430104 PRKCEQ02156 737 aa20.99■□□□□ 0.95
SHH-202ENST00000430104 RBL2Q08999 1139 aa20.99■□□□□ 0.95
SHH-202ENST00000430104 DNAJB3Q8WWF6 145 aa20.99■□□□□ 0.95
SHH-202ENST00000430104 FAM49AQ9H0Q0 323 aaPredicted RBP20.99■□□□□ 0.95
SHH-202ENST00000430104 TTC12Q9H892 705 aaPredicted RBP20.99■□□□□ 0.95
SHH-202ENST00000430104 NRBP2Q9NSY0 501 aa20.99■□□□□ 0.95
SHH-202ENST00000430104 RSPH10B2B2RC85 870 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 OATP04181 439 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 RSPH10BP0C881 870 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 KLRC1P26715 233 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 RFC2P35250 354 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 TOB1P50616 345 aaPredicted RBP20.98■□□□□ 0.95
SHH-202ENST00000430104 ZNF484Q5JVG2 852 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 PSRC1Q6PGN9 363 aaPredicted RBP20.98■□□□□ 0.95
SHH-202ENST00000430104 MTHFD1LQ6UB35 978 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 OTOP2Q7RTS6 562 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 INTS4Q96HW7 963 aaKnown RBP20.98■□□□□ 0.95
SHH-202ENST00000430104 MTMR9Q96QG7 549 aa20.98■□□□□ 0.95
SHH-202ENST00000430104 MBLAC1A4D2B0 266 aaPredicted RBP20.97■□□□□ 0.95
SHH-202ENST00000430104 TRAPPC10P48553 1259 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 TAF2Q6P1X5 1199 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 TRAF7Q6Q0C0 670 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 RSPH3Q86UC2 560 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 VWCEQ96DN2 955 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 FAM167AQ96KS9 214 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 SEPT9Q9UHD8 586 aaPredicted RBP20.97■□□□□ 0.95
SHH-202ENST00000430104 PCDHB6Q9Y5E3 794 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 COL1A2P08123 1366 aa20.97■□□□□ 0.95
SHH-202ENST00000430104 TET1Q8NFU7 2136 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 DDX11L8A8MPP1 907 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 NBNO60934 754 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 HSP90AA1P07900 732 aaKnown RBP20.96■□□□□ 0.95
SHH-202ENST00000430104 OR52Z1P0C646 297 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 PDCP20941 246 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 PSMC5P62195 406 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 SPIRE1Q08AE8 756 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 GPNMBQ14956 572 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 EPHA7Q15375 998 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 SPRYD3Q8NCJ5 442 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 DYDC2Q96IM9 177 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 RGL1Q9NZL6 768 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 PCDHA2Q9Y5H9 948 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 TRIOBPQ9H2D6 2365 aa20.96■□□□□ 0.95
SHH-202ENST00000430104 TMEM150BA6NC51 233 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 ZBBXA8MT70 800 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 ZBTB42B2RXF5 422 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 SOX1O00570 391 aaPredicted RBP20.95■□□□□ 0.94
SHH-202ENST00000430104 TECP42680 631 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 QARSP47897 775 aaKnown RBP20.95■□□□□ 0.94
SHH-202ENST00000430104 CYP4A11Q02928 519 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 TMEM62Q0P6H9 643 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 CTTNQ14247 550 aaKnown RBP20.95■□□□□ 0.94
SHH-202ENST00000430104 MBTPS1Q14703 1052 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 MTERF2Q49AM1 385 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 FERMT3Q86UX7 667 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 SH2D3AQ9BRG2 576 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 CEP131Q9UPN4 1083 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 LOXHD1Q8IVV2 1947 aa20.95■□□□□ 0.94
SHH-202ENST00000430104 POTEMA6NI47 508 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 CAND2O75155 1236 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 PARNO95453 639 aaKnown RBP20.94■□□□□ 0.94
SHH-202ENST00000430104 P4HBP07237 508 aaKnown RBP20.94■□□□□ 0.94
SHH-202ENST00000430104 PFKMP08237 780 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 ACTN1P12814 892 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 ORC2Q13416 577 aaPredicted RBP20.94■□□□□ 0.94
SHH-202ENST00000430104 XKR3Q5GH77 459 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 TPH2Q8IWU9 490 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 METTL13Q8N6R0 699 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 HERVK_113Q902F9 699 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 LRCH3Q96II8 777 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 EIF2AK1Q9BQI3 630 aaKnown RBP20.94■□□□□ 0.94
SHH-202ENST00000430104 CXXC1Q9P0U4 656 aaPredicted RBP20.94■□□□□ 0.94
SHH-202ENST00000430104 SIP14410 1827 aa20.94■□□□□ 0.94
SHH-202ENST00000430104 SMIM35A0A1B0GVV1 85 aa20.93■□□□□ 0.94
SHH-202ENST00000430104 CHRNA1P02708 482 aa20.93■□□□□ 0.94
SHH-202ENST00000430104 SYT1P21579 422 aa20.93■□□□□ 0.94
SHH-202ENST00000430104 FXR1P51114 621 aaKnown RBP eCLIP20.93■□□□□ 0.94
SHH-202ENST00000430104 PTGDRQ13258 359 aa20.93■□□□□ 0.94
SHH-202ENST00000430104 LRIT3Q3SXY7 679 aa20.93■□□□□ 0.94
SHH-202ENST00000430104 RILPL1Q5EBL4 403 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms