RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CEP104O60308 925 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 KRT18P05783 430 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 GHRP10912 638 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 HSPA6P17066 643 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ATP2B4P23634 1241 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 RDXP35241 583 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 GSCP56915 257 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ERVK-9P63128 1117 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 PPP2R2AP63151 447 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 GUCY1A3Q02108 690 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ZNF543Q08ER8 600 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 AP3B2Q13367 1082 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 LRRC41Q15345 812 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 NFIL3Q16649 462 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 EXOC3L4Q17RC7 722 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ALKBH5Q6P6C2 394 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 C6orf89Q6UWU4 347 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 PEX26Q7Z412 305 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 IRF2BP2Q7Z5L9 587 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 LINC00116Q8NCU8 138 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 TPCN2Q8NHX9 752 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 CYFIP2Q96F07 1278 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ACSBG1Q96GR2 724 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 FAM129AQ9BZQ8 928 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 EHD4Q9H223 541 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 SAP30BPQ9UHR5 308 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 SLC12A6Q9UHW9 1150 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 NAGPAQ9UK23 515 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 MTMR7Q9Y216 660 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 SUGT1Q9Y2Z0 365 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 UTP11Q9Y3A2 253 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 NOC2LQ9Y3T9 749 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 NFS1Q9Y697 457 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 NCANO14594 1321 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 ESYT3A0FGR9 886 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 FAM187AA6NFU0 413 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 KRIT1O00522 736 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 NKRFO15226 690 aaKnown RBP eCLIP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 TTLL1O95922 423 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 XRCC5P13010 732 aaKnown RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 IL1R1P14778 569 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 UCHL3P15374 230 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 CYP11B2P19099 503 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 LMNB1P20700 586 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 NR2F2P24468 414 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 TM4SF1P30408 202 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 LACTB2Q53H82 288 aaPredicted RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 RNF187Q5TA31 235 aaPredicted RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 KCNV1Q6PIU1 500 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 KCNK18Q7Z418 384 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 KLHL7Q8IXQ5 586 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 SCFD1Q8WVM8 642 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 HAS1Q92839 578 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 ZBTB9Q96C00 473 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 STMN4Q9H169 189 aaPredicted RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 VAT1LQ9HCJ6 419 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 KCNMB3Q9NPA1 279 aa12.02□□□□□ -0.48
LIMS1-207ENST00000422797 TYW1Q9NV66 732 aaKnown RBP12.02□□□□□ -0.48
LIMS1-207ENST00000422797 UBE4BO95155 1302 aa12.02□□□□□ -0.49
LIMS1-207ENST00000422797 ZBTB5O15062 677 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 GAP43P17677 238 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 RFX1P22670 979 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ECHS1P30084 290 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ATP2B2Q01814 1243 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 PTK2Q05397 1052 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 PDE4CQ08493 712 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ZNF844Q08AG5 666 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 DHX34Q14147 1143 aaKnown RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 DIXDC1Q155Q3 683 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 KNOP1Q1ED39 458 aaKnown RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 SKIDA1Q1XH10 827 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 BICDL1Q6ZP65 573 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 CACNA2D3Q8IZS8 1091 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 RUNDC3BQ96NL0 473 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 DHX36Q9H2U1 1008 aaKnown RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 RASAL2Q9UJF2 1139 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 AMFRQ9UKV5 643 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ATF5Q9Y2D1 282 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 STXBP5LQ9Y2K9 1186 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 SPATA31A5Q5VU36 1347 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 SPATA31A7Q8IWB4 1347 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 TAF1P21675 1872 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 CDK5RAP2Q96SN8 1893 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 SSBP05455 408 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 TMEM253P0C7T8 217 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 MAP2K2P36507 400 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 STAT1P42224 750 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 DRG2P55039 364 aaKnown RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 JAM2P57087 298 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 HDLBPQ00341 1268 aaKnown RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 SLC4A8Q2Y0W8 1093 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 NBPF9Q3BBW0 867 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ODF2Q5BJF6 829 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 GKAP1Q5VSY0 366 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 FBXW10Q5XX13 1052 aa12.01□□□□□ -0.49
LIMS1-207ENST00000422797 TTC19Q6DKK2 380 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 EPM2AIP1Q7L775 607 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-207ENST00000422797 ZNF571Q7Z3V5 609 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms