RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RGS19P49795 217 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 ZNF165P49910 485 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 STIM1Q13586 685 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 MORC3Q14149 939 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 KCNB1Q14721 858 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 DPCR1Q3MIW9 517 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 L1TD1Q5T7N2 865 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 UNC13DQ70J99 1090 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 CCDC65Q8IXS2 484 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 MLKLQ8NB16 471 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 RNF214Q8ND24 703 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 ERO1AQ96HE7 468 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 BCAS3Q9H6U6 928 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 KCND2Q9NZV8 630 aa19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 DBR1Q9UK59 544 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 PVALEFA0A1B0GWK0 134 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CCDC85CA6NKD9 419 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 BECN2A8MW95 431 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 GPR25O00155 361 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 XRCC6P12956 609 aaKnown RBP eCLIP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CYP11B2P19099 503 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CTGFP29279 349 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 TCF7P36402 384 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 FLT3LGP49771 235 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 PRKCEQ02156 737 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 MLLT1Q03111 559 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CCL14Q16627 93 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 UGCGQ16739 394 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 KMT5BQ4FZB7 885 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CNNM4Q6P4Q7 775 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 TRMT1LQ7Z2T5 733 aaKnown RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CCDC60Q8IWA6 550 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 CD99L2Q8TCZ2 262 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 KATNBL1Q9H079 304 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 ZHX3Q9H4I2 956 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 ANKEF1Q9NU02 776 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 FLRT1Q9NZU1 646 aa19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 WRAP73Q9P2S5 460 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 SEPT9Q9UHD8 586 aaPredicted RBP19.05■□□□□ 0.64
CCDC28B-202ENST00000421922 IGSF9BQ9UPX0 1349 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 ARID2Q68CP9 1835 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 ATG7O95352 703 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 CYP2C19P33261 490 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 TNFAIP2Q03169 654 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 PRKCZQ05513 592 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 CCDC144BQ3MJ40 725 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 DUSP28Q4G0W2 176 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 XKR9Q5GH70 373 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 UTP14CQ5TAP6 766 aaKnown RBP19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 C11orf57Q6ZUT1 292 aaPredicted RBP19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 OR6J1Q8NGC5 347 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 GLG1Q92896 1179 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 COPS5Q92905 334 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 RBSNQ9H1K0 784 aa19.04■□□□□ 0.64
CCDC28B-202ENST00000421922 MYH11P35749 1972 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GSTTP1A0A1W2PQM5 241 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GOLGA6L19H0YKK7 550 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 FKTNO75072 461 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 RHOBTB3O94955 611 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GNRH1P01148 92 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 MRE11P49959 708 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 STAT5BP51692 787 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 TPM4P67936 248 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 RAD51AP2Q09MP3 1159 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 XKR3Q5GH77 459 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 ZNF658Q5TYW1 1059 aaPredicted RBP19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 FAM167AQ96KS9 214 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GPR20Q99678 358 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GRPEL1Q9HAV7 217 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 PANK4Q9NVE7 773 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 GABRQQ9UN88 632 aa19.03■□□□□ 0.64
CCDC28B-202ENST00000421922 FSD2A1L4K1 749 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 KLRC4O43908 158 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 FAM13AO94988 1023 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 OATP04181 439 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 ARHGAP1Q07960 439 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 RINT1Q6NUQ1 792 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 PADI6Q6TGC4 694 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 EMID1Q96A84 441 aaPredicted RBP19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 RUSC1Q9BVN2 902 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 NRBP2Q9NSY0 501 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 NRBP1Q9UHY1 535 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 FAM184BQ9ULE4 1060 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 EMSYQ7Z589 1322 aa19.02■□□□□ 0.64
CCDC28B-202ENST00000421922 NPHP3-ACAD11A0A0J9YXS1 232 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 ZBTB39O15060 712 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 USO1O60763 962 aaKnown RBP19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 SMPD1P17405 629 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 PPP1R2P41236 205 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 RARRES1P49788 294 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 COASYQ13057 564 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 PSMD2Q13200 908 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 HSDL1Q3SXM5 330 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 PRAMEF19Q5SWL8 479 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 PPTC7Q8NI37 304 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 AFAP1L1Q8TED9 768 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 CEP170P1Q96L14 293 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 REEP2Q9BRK0 252 aa19.01■□□□□ 0.63
CCDC28B-202ENST00000421922 SMARCAD1Q9H4L7 1026 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms