RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CPLX3Q8WVH0 158 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 TCP11Q8WWU5 503 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 CRYGNQ8WXF5 182 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 CLEC4DQ8WXI8 215 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 DNAI2Q9GZS0 605 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 UNC45AQ9H3U1 944 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 GBA2Q9HCG7 927 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 KCNH4Q9UQ05 1017 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 R3HCC1Q9Y3T6 440 aaKnown RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 K7ENM7 598 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 GAS2O43903 313 aaKnown RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 KLRC4O43908 158 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 DGAT1O75907 488 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SLURP2P0DP57 97 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 IFI16Q16666 785 aaKnown RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 MTERF4Q7Z6M4 381 aaKnown RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 ZNF592Q92610 1267 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 MMRN2Q9H8L6 949 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 VAV3Q9UKW4 847 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 IGLV3-22A0A075B6J6 115 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 STRNO43815 780 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 KRT9P35527 623 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 RFC5P40937 340 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 HERVK_113P62684 666 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 HSP90AA4PQ58FG1 418 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 CEP135Q66GS9 1140 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SLC7A3Q8WY07 619 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 OPTNQ96CV9 577 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 BICD1Q96G01 975 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 ZNF830Q96NB3 372 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 ATP6V0A4Q9HBG4 840 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 KIAA1586Q9HCI6 787 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 TBC1D7Q9P0N9 293 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 NR2F2P24468 414 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 ZBED6P86452 979 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 TTLL4Q14679 1199 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 TTI2Q6NXR4 508 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.23□□□□□ -0.93
USP54-203ENST00000418501 SFR1Q86XK3 245 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 SPAG5Q96R06 1193 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 NDST4Q9H3R1 872 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 SPTLC3Q9NUV7 552 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 ADAMTS5Q9UNA0 930 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 BZW2Q9Y6E2 419 aaKnown RBP9.23□□□□□ -0.93
USP54-203ENST00000418501 FRMPD4Q14CM0 1322 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 A0A087WWV3 80 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 CASP1P29466 404 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 YWHABP31946 246 aaKnown RBP9.23□□□□□ -0.93
USP54-203ENST00000418501 SLC12A3P55017 1021 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 STK4Q13043 487 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 TFDP1Q14186 410 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 IQCEQ6IPM2 695 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 NELFCDQ8IXH7 590 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 MNS1Q8NEH6 495 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 CACTINQ8WUQ7 758 aaKnown RBP9.23□□□□□ -0.93
USP54-203ENST00000418501 CEP170P1Q96L14 293 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 HSD17B14Q9BPX1 270 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 CYP39A1Q9NYL5 469 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 KRT86O43790 486 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 EXOC3O60645 756 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 EGFRP00533 1210 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 ARP10275 920 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 GIT2Q14161 759 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 TMEM132AQ24JP5 1023 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 FIGNQ5HY92 759 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 RINT1Q6NUQ1 792 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 GBP6Q6ZN66 633 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 CCDC170Q8IYT3 715 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 CCDC42Q96M95 316 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 REEP2Q9BRK0 252 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 ZNF302Q9NR11 478 aa9.23□□□□□ -0.93
USP54-203ENST00000418501 A0A1W2PQJ5 194 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 CCDC169A6NNP5 214 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 AFPP02771 609 aaKnown RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 RFX1P22670 979 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 CASQ1P31415 396 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 SLC26A2P50443 739 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 POLGP54098 1239 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 HIRAP54198 1017 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 KIAA1755Q5JYT7 1200 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 FAM102BQ5T8I3 360 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ANKRD40Q6AI12 368 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ASCC2Q9H1I8 757 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 MYO1AQ9UBC5 1043 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ZNF536O15090 1300 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 PLS3P13797 630 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ICAM3P32942 547 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 MUM1L1Q5H9M0 696 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 SLFN12LQ6IEE8 588 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ZBTB8OSQ8IWT0 167 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 DEPTORQ8TB45 409 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 INPP4AQ96PE3 977 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 ASTN2O75129 1339 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 MFAP3LO75121 409 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 SLITRK3O94933 977 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 CLSTN1O94985 981 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 POTEJP0CG39 1038 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ZBTB48P10074 688 aaPredicted RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 CD44P16070 742 aaKnown RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 ANXA13P27216 316 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms