RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 FAPQ12884 760 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 ZNF174Q15697 407 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 DDB1Q16531 1140 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 CIAPIN1Q6FI81 312 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 HHIPL2Q6UWX4 724 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 ZBTB46Q86UZ6 589 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 KRTAP19-1Q8IUB9 90 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 PASD1Q8IV76 773 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 TMEM151BQ8IW70 566 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 SCYL1Q96KG9 808 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 TOX2Q96NM4 488 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 H2AFY2Q9P0M6 372 aaPredicted RBP6.22□□□□□ -1.41
VPS54-204ENST00000416400 PLA2G2DQ9UNK4 145 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 PMF1-BGLAPU3KQ54 211 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.21□□□□□ -1.42
VPS54-204ENST00000416400 TCRBV5S4A2TA0A5A2 114 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 PRAMEF25A6NGN4 478 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 MAN2B1O00754 1011 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 SCDO00767 359 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 GABRDO14764 452 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 NUAK1O60285 661 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 CLASP2O75122 1294 aaKnown RBP6.21□□□□□ -1.42
VPS54-204ENST00000416400 FAHP16930 419 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 PTPN1P18031 435 aaKnown RBP6.21□□□□□ -1.42
VPS54-204ENST00000416400 SESN3P58005 492 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 LINC00310P59036 64 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 RGL3Q3MIN7 710 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 VASNQ6EMK4 673 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 TEPPQ6URK8 271 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 FAM26EQ8N5C1 309 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 SH3RF2Q8TEC5 729 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 SLC5A5Q92911 643 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 PWWP2AQ96N64 755 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 MENTQ9BUN1 341 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 PCIF1Q9H4Z3 704 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 CD320Q9NPF0 282 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 SPEF1Q9Y4P9 236 aa6.21□□□□□ -1.42
VPS54-204ENST00000416400 K7ESF4 209 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 FBXO21O94952 628 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 C8BP07358 591 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 ENO2P09104 434 aaPredicted RBP6.2□□□□□ -1.42
VPS54-204ENST00000416400 ZBTB48P10074 688 aaPredicted RBP6.2□□□□□ -1.42
VPS54-204ENST00000416400 IGFBP6P24592 240 aaPredicted RBP6.2□□□□□ -1.42
VPS54-204ENST00000416400 PPP2R5AQ15172 486 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 NFE2Q16621 373 aaPredicted RBP6.2□□□□□ -1.42
VPS54-204ENST00000416400 FAM129CQ86XR2 697 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 NOSTRINQ8IVI9 506 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 TTLL6Q8N841 843 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 KIAA1958Q8N8K9 716 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 ZSCAN18Q8TBC5 510 aaPredicted RBP6.2□□□□□ -1.42
VPS54-204ENST00000416400 ZBTB8AQ96BR9 441 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 CHMP4CQ96CF2 233 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 CCDC136Q96JN2 1154 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 CLIC6Q96NY7 704 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 WRNIP1Q96S55 665 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 TMEM209Q96SK2 561 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 AASDHPPTQ9NRN7 309 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 ARHGAP28Q9P2N2 729 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 SPO11Q9Y5K1 396 aa6.2□□□□□ -1.42
VPS54-204ENST00000416400 E2F8A0AVK6 867 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 TGM5O43548 720 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 CYP7B1O75881 506 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 LRG1P02750 347 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 SLC9A1P19634 815 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 KIF11P52732 1056 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 ERVK-21P61565 698 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 SSPNQ14714 243 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 TMEM132BQ14DG7 1078 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 ABCB5Q2M3G0 1257 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 CR1LQ2VPA4 569 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 CPZQ66K79 652 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 FSTL4Q6MZW2 842 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 TTLL7Q6ZT98 887 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 CLRN3Q8NCR9 226 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 WDR48Q8TAF3 677 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 AHCYL2Q96HN2 611 aaKnown RBP6.19□□□□□ -1.42
VPS54-204ENST00000416400 PDGFDQ9GZP0 370 aaPredicted RBP6.19□□□□□ -1.42
VPS54-204ENST00000416400 KCNH7Q9NS40 1196 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 WASHC2AQ641Q2 1341 aa6.19□□□□□ -1.42
VPS54-204ENST00000416400 SHTN1A0MZ66 631 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 FAM90A27PA6NNH2 459 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 AKAP10O43572 662 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TSPAN6O43657 245 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 KRT1P04264 644 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 LSP1P33241 339 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 RAB27AP51159 221 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 AFF3P51826 1226 aaKnown RBP6.18□□□□□ -1.42
VPS54-204ENST00000416400 PIN1Q13526 163 aaPredicted RBP6.18□□□□□ -1.42
VPS54-204ENST00000416400 BROXQ5VW32 411 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TCERG1LQ5VWI1 586 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TMC5Q6UXY8 1006 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TMEFF1Q8IYR6 380 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 KYQ8NBH2 561 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TSR2Q969E8 191 aaKnown RBP6.18□□□□□ -1.42
VPS54-204ENST00000416400 HOOK2Q96ED9 719 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 GORASP1Q9BQQ3 440 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 VTA1Q9NP79 307 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TOMM22Q9NS69 142 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 ZIM2Q9NZV7 527 aa6.18□□□□□ -1.42
VPS54-204ENST00000416400 TELO2Q9Y4R8 837 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms