RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 LOXHD1Q8IVV2 1947 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 A0A087WWV3 80 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 SPATA31C2B4DYI2 1134 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 BIN1O00499 593 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 RGS20O76081 388 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 CAVIN2O95810 425 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 AKR1A1P14550 325 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 KCNA2P16389 499 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 ICAM3P32942 547 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 SARSP49591 514 aaKnown RBP12.59□□□□□ -0.39
LINC00539-201ENST00000411525 KRT76Q01546 638 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 EPHA7Q15375 998 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 TRIM60Q495X7 471 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 L1TD1Q5T7N2 865 aaKnown RBP12.59□□□□□ -0.39
LINC00539-201ENST00000411525 POTEGQ6S5H5 508 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 MIER3Q7Z3K6 550 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 CATSPER3Q86XQ3 398 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 TRIML1Q8N9V2 468 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 SPATA20Q8TB22 786 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 DNAJC25Q9H1X3 360 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 GRPEL1Q9HAV7 217 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 TUFT1Q9NNX1 390 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 XPNPEP3Q9NQH7 507 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 PHF24Q9UPV7 400 aa12.59□□□□□ -0.39
LINC00539-201ENST00000411525 ATP9AO75110 1047 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 SPATA31C1P0DKV0 1188 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 MUTP22033 750 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 CASP1P29466 404 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 MRE11P49959 708 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 JAK3P52333 1124 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 AMPD3Q01432 767 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 CYP4A11Q02928 519 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 CUL4BQ13620 913 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 MCM6Q14566 821 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF792Q3KQV3 632 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 DPCR1Q3MIW9 517 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 C11orf57Q6ZUT1 292 aaPredicted RBP12.58□□□□□ -0.4
LINC00539-201ENST00000411525 SV2BQ7L1I2 683 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 KCNK18Q7Z418 384 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 KCTD17Q8N5Z5 321 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 RNF214Q8ND24 703 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 FAM200AQ8TCP9 573 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 MORC4Q8TE76 937 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 BADQ92934 168 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 DYDC2Q96IM9 177 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 TSEN34Q9BSV6 310 aaKnown RBP12.58□□□□□ -0.4
LINC00539-201ENST00000411525 BLZF1Q9H2G9 400 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 PDLIM7Q9NR12 457 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 KIAA1024Q9UPX6 916 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 MCM3APO60318 1980 aa12.58□□□□□ -0.4
LINC00539-201ENST00000411525 DOCK5Q9H7D0 1870 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 ASB14A6NK59 587 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 WDR64B1ANS9 1081 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 RPN1P04843 607 aaKnown RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 SFNP31947 248 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 SMAD3P84022 425 aaKnown RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 MORC3Q14149 939 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 SHHQ15465 462 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF746Q6NUN9 644 aaPredicted RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 SEPT14Q6ZU15 432 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF467Q7Z7K2 595 aaPredicted RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 RDM1Q8NG50 284 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 GSDMAQ96QA5 445 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 HSD17B14Q9BPX1 270 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 C7orf25Q9BPX7 421 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 SENP7Q9BQF6 1050 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 LXNQ9BS40 222 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 TRIM9Q9C026 710 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 LRRC27Q9C0I9 530 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 NAT10Q9H0A0 1025 aaKnown RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 JPH1Q9HDC5 661 aaPredicted RBP12.57□□□□□ -0.4
LINC00539-201ENST00000411525 RMND1Q9NWS8 449 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 RGL1Q9NZL6 768 aa12.57□□□□□ -0.4
LINC00539-201ENST00000411525 E9PMD0 336 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 CCNE2O96020 404 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 CLTBP09497 229 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 PLA2G4BP0C869 781 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF165P49910 485 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 TLE2Q04725 743 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 CTTNQ14247 550 aaKnown RBP12.56□□□□□ -0.4
LINC00539-201ENST00000411525 DHX8Q14562 1220 aaKnown RBP12.56□□□□□ -0.4
LINC00539-201ENST00000411525 ISM2Q6H9L7 571 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 ARMCX2Q7L311 632 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.56□□□□□ -0.4
LINC00539-201ENST00000411525 SMAP1Q8IYB5 467 aaPredicted RBP12.56□□□□□ -0.4
LINC00539-201ENST00000411525 TOX2Q96NM4 488 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 GUCD1Q96NT3 240 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 DACH1Q9UI36 760 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 FAM184BQ9ULE4 1060 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 DNM3Q9UQ16 869 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 SYNGAP1Q96PV0 1343 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 MYO9BQ13459 2157 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 PRUNE2Q8WUY3 3088 aa12.56□□□□□ -0.4
LINC00539-201ENST00000411525 A0A1W2PQ45 241 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 A0A1W2PQY0 241 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 TRIM43BA6NCK2 446 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 MOXD2PA6NHM9 499 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 MYMKA6NI61 221 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SLITRK3O94933 977 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 EYA4O95677 639 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms