RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MAFBQ9Y5Q3 323 aaPredicted RBP21.6■■□□□ 1.05
SF3A1-202ENST00000411423 REV3LO60673 3130 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.59■■□□□ 1.05
SF3A1-202ENST00000411423 RRN3P2A6NIE6 340 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 SLC37A4O43826 429 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 GHRP10912 638 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 TAP1Q03518 808 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 LPIN1Q14693 890 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 NONOQ15233 471 aaKnown RBP eCLIP21.59■■□□□ 1.05
SF3A1-202ENST00000411423 PDXDC2PQ6P474 469 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 USP38Q8NB14 1042 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 MAFAQ8NHW3 353 aaPredicted RBP21.59■■□□□ 1.05
SF3A1-202ENST00000411423 ATP8B4Q8TF62 1192 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 FAM49AQ9H0Q0 323 aaPredicted RBP21.59■■□□□ 1.05
SF3A1-202ENST00000411423 UNC45AQ9H3U1 944 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 CERS4Q9HA82 394 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 CDY2AQ9Y6F7 541 aa21.59■■□□□ 1.05
SF3A1-202ENST00000411423 RFXAPO00287 272 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 PSMD10O75832 226 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 KRT76Q01546 638 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 TMEM62Q0P6H9 643 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 UGCGQ16739 394 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 FAM160B1Q5W0V3 765 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 FAM117BQ6P1L5 589 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 MTHFD1LQ6UB35 978 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 B3GNT9Q6UX72 402 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 ETNPPLQ8TBG4 499 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 TNFRSF25Q93038 417 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 GABBR1Q9UBS5 961 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 PCDHA2Q9Y5H9 948 aa21.58■■□□□ 1.05
SF3A1-202ENST00000411423 IGSF9BQ9UPX0 1349 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 WDR81Q562E7 1941 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 CHMP2AO43633 222 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 TLL1O43897 1013 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 ZNF862O60290 1169 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 HBP1O60381 514 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 GJB5O95377 273 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 KLRC1P26715 233 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 SLC26A2P50443 739 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 FOSBP53539 338 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 NR5A1Q13285 461 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 TRMT1LQ7Z2T5 733 aaKnown RBP21.57■■□□□ 1.04
SF3A1-202ENST00000411423 KRT25Q7Z3Z0 450 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 SMAP1Q8IYB5 467 aaPredicted RBP21.57■■□□□ 1.04
SF3A1-202ENST00000411423 SLC17A8Q8NDX2 589 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 SEPT8Q92599 483 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 C22orf23Q9BZE7 217 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 AGO3Q9H9G7 860 aaKnown RBP21.57■■□□□ 1.04
SF3A1-202ENST00000411423 PCDHA10Q9Y5I2 948 aa21.57■■□□□ 1.04
SF3A1-202ENST00000411423 EIF5BO60841 1220 aaKnown RBP21.56■■□□□ 1.04
SF3A1-202ENST00000411423 PSAPP07602 524 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 MRPS6P82932 125 aaKnown RBP21.56■■□□□ 1.04
SF3A1-202ENST00000411423 LETM2Q2VYF4 491 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 FBXO47Q5MNV8 452 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 LRCH2Q5VUJ6 765 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 MOXD1Q6UVY6 613 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 PIK3AP1Q6ZUJ8 805 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 RIT2Q99578 217 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 IFIH1Q9BYX4 1025 aaKnown RBP21.56■■□□□ 1.04
SF3A1-202ENST00000411423 DISC1Q9NRI5 854 aa21.56■■□□□ 1.04
SF3A1-202ENST00000411423 WDR64B1ANS9 1081 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 GAS7O60861 476 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 EFCAB14O75071 495 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 MYOCDQ8IZQ8 938 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 TEKT3Q9BXF9 490 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 CDHR5Q9HBB8 845 aa21.55■■□□□ 1.04
SF3A1-202ENST00000411423 DDX25Q9UHL0 483 aaKnown RBP21.55■■□□□ 1.04
SF3A1-202ENST00000411423 COL1A2P08123 1366 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 A0A0C4DFX4 3053 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 CCDC194A0A1B0GVG4 234 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 SMIM35A0A1B0GVV1 85 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 WNT7AO00755 349 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 C22orf31O95567 290 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 RSPH3Q86UC2 560 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 KIAA0319LQ8IZA0 1049 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 LINC01599Q8WXQ3 324 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 SAMM50Q9Y512 469 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 TRPV2Q9Y5S1 764 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 TRANK1O15050 2925 aa21.54■■□□□ 1.04
SF3A1-202ENST00000411423 STBD1O95210 358 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 RBM25P49756 843 aaKnown RBP21.53■■□□□ 1.04
SF3A1-202ENST00000411423 ZNF484Q5JVG2 852 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 NEK8Q86SG6 692 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 CCDC83Q8IWF9 413 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 CKAP2LQ8IYA6 745 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 BBXQ8WY36 941 aaPredicted RBP21.53■■□□□ 1.04
SF3A1-202ENST00000411423 GAS2L1Q99501 681 aaPredicted RBP21.53■■□□□ 1.04
SF3A1-202ENST00000411423 RAD9AQ99638 391 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 ZBED2Q9BTP6 218 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 PRDM6Q9NQX0 595 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 LIMCH1Q9UPQ0 1083 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 LOXHD1Q8IVV2 1947 aa21.53■■□□□ 1.04
SF3A1-202ENST00000411423 MYH9P35579 1960 aaKnown RBP21.52■■□□□ 1.04
SF3A1-202ENST00000411423 TMEM150BA6NC51 233 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 KIF28PB7ZC32 967 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 EML1O00423 815 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 AMHP03971 560 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 XBP1P17861 261 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 CD52P31358 61 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 HTRA4P83105 476 aaPredicted RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms