RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TRIM21P19474 475 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 TOGARAM2Q6ZUX3 1019 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 REXO1L1PQ8IX06 675 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 ZC3H3Q8IXZ2 948 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 MYRIPQ8NFW9 859 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 IQCDQ96DY2 449 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 CLMNQ96JQ2 1002 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 POLD4Q9HCU8 107 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 ZC3H4Q9UPT8 1303 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 TRAF3IP3Q9Y228 551 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 SFI1A8K8P3 1242 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 WDR64B1ANS9 1081 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 PDXKO00764 312 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 CETN3O15182 167 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 NKRFO15226 690 aaKnown RBP eCLIP20.94■□□□□ 0.94
USP39-202ENST00000409025 CALUO43852 315 aaPredicted RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 STAM2O75886 525 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 PRPF6O94906 941 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 LYPLA2O95372 231 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 GUCY2CP25092 1073 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 ADAM9Q13443 819 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 GPR162Q16538 588 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 TSR1Q2NL82 804 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 CYP26C1Q6V0L0 522 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 OR8K1Q8NGG5 319 aa20.94■□□□□ 0.94
USP39-202ENST00000409025 INPP4AQ96PE3 977 aaPredicted RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 DBR1Q9UK59 544 aaKnown RBP20.94■□□□□ 0.94
USP39-202ENST00000409025 EIF3DO15371 548 aaKnown RBP eCLIP20.93■□□□□ 0.94
USP39-202ENST00000409025 ZNF131P52739 623 aa20.93■□□□□ 0.94
USP39-202ENST00000409025 MARSP56192 900 aaKnown RBP20.93■□□□□ 0.94
USP39-202ENST00000409025 IRX3P78415 501 aaPredicted RBP20.93■□□□□ 0.94
USP39-202ENST00000409025 MOB2Q70IA6 237 aa20.93■□□□□ 0.94
USP39-202ENST00000409025 RDM1Q8NG50 284 aa20.93■□□□□ 0.94
USP39-202ENST00000409025 FBXO40Q9UH90 709 aa20.93■□□□□ 0.94
USP39-202ENST00000409025 A0A0G2JMZ2 1700 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 CCDC175P0C221 793 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 MTF1Q14872 753 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 EAPPQ56P03 285 aaPredicted RBP20.92■□□□□ 0.94
USP39-202ENST00000409025 FIGNQ5HY92 759 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 PADI6Q6TGC4 694 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 RAD9BQ6WBX8 426 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 STXBP4Q6ZWJ1 553 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 RIOX2Q8IUF8 465 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 KIF18AQ8NI77 898 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 CDHR1Q96JP9 859 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 TYW1Q9NV66 732 aaKnown RBP20.92■□□□□ 0.94
USP39-202ENST00000409025 IQCA1LA6NCM1 817 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 NR2F2P24468 414 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 HOXD13P35453 343 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 PSMC5P62195 406 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 PPIL2Q13356 520 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 ZNF746Q6NUN9 644 aaPredicted RBP20.92■□□□□ 0.94
USP39-202ENST00000409025 ARMC9Q7Z3E5 817 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 ANKRD35Q8N283 1001 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 IWS1Q96ST2 819 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 DNAJC7Q99615 494 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 TTYH3Q9C0H2 523 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 BTBD7Q9P203 1132 aa20.92■□□□□ 0.94
USP39-202ENST00000409025 PFASO15067 1338 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 SCN4AP35499 1836 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 CCNE2O96020 404 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 KLK7P49862 253 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 GNPTABQ3T906 1256 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 C4orf19Q8IY42 314 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 DNERQ8NFT8 737 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 CCDC43Q96MW1 224 aaKnown RBP20.91■□□□□ 0.94
USP39-202ENST00000409025 SENP7Q9BQF6 1050 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 DESI2Q9BSY9 194 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 TAF1DQ9H5J8 278 aaPredicted RBP20.91■□□□□ 0.94
USP39-202ENST00000409025 BCAS3Q9H6U6 928 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 KCNH4Q9UQ05 1017 aa20.91■□□□□ 0.94
USP39-202ENST00000409025 UBE4BO95155 1302 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 A0A1W2PQJ5 194 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 RASSF10A6NK89 507 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 RPL13P26373 211 aaKnown RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 NMT1P30419 496 aaKnown RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 YWHABP31946 246 aaKnown RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 FAM178BQ8IXR5 827 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 ZNF397Q8NF99 534 aaPredicted RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 MOV10L1Q9BXT6 1211 aaKnown RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 SIK3Q9Y2K2 1263 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 RIOK3O14730 519 aaKnown RBP20.9■□□□□ 0.94
USP39-202ENST00000409025 HIP1RO75146 1068 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 RARRES1P49788 294 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 ERVK-24P63145 666 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 ZBED6P86452 979 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 ODR4Q5SWX8 454 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 TRIM59Q8IWR1 403 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 FAM184BQ9ULE4 1060 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 AGTPBP1Q9UPW5 1226 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 PCDHA10Q9Y5I2 948 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.9■□□□□ 0.94
USP39-202ENST00000409025 ADGRG1Q9Y653 693 aa20.9■□□□□ 0.94
USP39-202ENST00000409025 KIAA1217Q5T5P2 1943 aa20.89■□□□□ 0.94
USP39-202ENST00000409025 NFASCO94856 1347 aa20.89■□□□□ 0.94
USP39-202ENST00000409025 RGS20O76081 388 aa20.89■□□□□ 0.93
USP39-202ENST00000409025 KCNA2P16389 499 aa20.89■□□□□ 0.93
USP39-202ENST00000409025 ERCC3P19447 782 aa20.89■□□□□ 0.93
USP39-202ENST00000409025 ZNF720Q7Z2F6 126 aa20.89■□□□□ 0.93
USP39-202ENST00000409025 SPATC1LQ9H0A9 340 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms