RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 SMARCAL1Q9NZC9 954 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.94□□□□□ -0.5
HPS4-202ENST00000398145 SERPINB13Q9UIV8 391 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 THRAP3Q9Y2W1 955 aaKnown RBP11.94□□□□□ -0.5
HPS4-202ENST00000398145 ZC3H13Q5T200 1668 aaKnown RBP11.94□□□□□ -0.5
HPS4-202ENST00000398145 ATP2B4P23634 1241 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 TMC4Q7Z404 712 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 SPDL1Q96EA4 605 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 NACC1Q96RE7 527 aa11.94□□□□□ -0.5
HPS4-202ENST00000398145 XKR9Q5GH70 373 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 KCTD1Q719H9 257 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 Q9H521 79 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 HAUS2Q9NVX0 235 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 PNMA6FA0A0J9YX94 578 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 STK10O94804 968 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 CHRNA3P32297 505 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 CDK8P49336 464 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 ZNF211Q13398 564 aaPredicted RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 SPARCL1Q14515 664 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 CDC37Q16543 378 aaPredicted RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 PAPD7Q5XG87 772 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 TMED8Q6PL24 325 aaPredicted RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 NSMFQ6X4W1 530 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 SRRM1Q8IYB3 904 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 TAB3Q8N5C8 712 aaPredicted RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 THOC1Q96FV9 657 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 ETNK1Q9HBU6 452 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 PLAGL2Q9UPG8 496 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 CAMSAP1Q5T5Y3 1602 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 H0Y3Z8 333 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 ORC4O43929 436 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 NR3C1P04150 777 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 BRAFP15056 766 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 CD44P16070 742 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 YWHAGP61981 247 aaKnown RBP eCLIP11.93□□□□□ -0.5
HPS4-202ENST00000398145 RCN2Q14257 317 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 RASA3Q14644 834 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 ARMC2Q8NEN0 867 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 CYFIP2Q96F07 1278 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 RNPC3Q96LT9 517 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 NUF2Q9BZD4 464 aa11.93□□□□□ -0.5
HPS4-202ENST00000398145 BSDC1Q9NW68 430 aaPredicted RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 MRPL11Q9Y3B7 192 aaKnown RBP11.93□□□□□ -0.5
HPS4-202ENST00000398145 A0A1W2PQJ5 194 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SGK1O00141 431 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 PRDX5P30044 214 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 ARL1P40616 181 aaPredicted RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 GRM4Q14833 912 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 PDIA6Q15084 440 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 PTGISQ16647 500 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SMC1BQ8NDV3 1235 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 POMGNT1Q8WZA1 660 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 HPS3Q969F9 1004 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 ERGIC2Q96RQ1 377 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SLAIN2Q9P270 581 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 PPP1R9AQ9ULJ8 1098 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 RASA4BC9J798 803 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 E9PMD0 336 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 RASA4O43374 803 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 ESRRAP11474 423 aaPredicted RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 CDKAL1Q5VV42 579 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 CAPRIN2Q6IMN6 1127 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 NLRX1Q86UT6 975 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SEC16BQ96JE7 1060 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 ZNF512BQ96KM6 892 aaPredicted RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 WDR11Q9BZH6 1224 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 PCIF1Q9H4Z3 704 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 TMEM206Q9H813 350 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 MLXIPLQ9NP71 852 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 STOML1Q9UBI4 398 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 POLR2BP30876 1174 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 MSH2P43246 934 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 LIG4P49917 911 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SLC20A2Q08357 652 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 NAALADL2Q58DX5 795 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 FOXP4Q8IVH2 680 aaPredicted RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 LRRC37BQ96QE4 947 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 DNAJC7Q99615 494 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 YIPF3Q9GZM5 350 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 MRPL47Q9HD33 250 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 DMGDHQ9UI17 866 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 PHF20L1A8MW92 1017 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 MAP3K7O43318 606 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SERPINB6P35237 376 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 TPD52P55327 224 aaPredicted RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 DHX34Q14147 1143 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 KNOP1Q1ED39 458 aaKnown RBP11.92□□□□□ -0.5
HPS4-202ENST00000398145 ERFEQ4G0M1 354 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 TRIM42Q8IWZ5 723 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 RFFLQ8WZ73 363 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 SGSM3Q96HU1 749 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 ACCSQ96QU6 501 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 C7orf25Q9BPX7 421 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 LACRTQ9GZZ8 138 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 KANSL2Q9H9L4 492 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 BATF3Q9NR55 127 aa11.92□□□□□ -0.5
HPS4-202ENST00000398145 USP32Q8NFA0 1604 aa11.91□□□□□ -0.5
HPS4-202ENST00000398145 XDHP47989 1333 aa11.91□□□□□ -0.5
HPS4-202ENST00000398145 LMNAP02545 664 aaKnown RBP11.91□□□□□ -0.5
HPS4-202ENST00000398145 MT-ND3P03897 115 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms