RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TAF2Q6P1X5 1199 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 APOA5Q6Q788 366 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 FAM178BQ8IXR5 827 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CRIPAKQ8N1N5 446 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 APBB2Q92870 758 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 BRF1Q92994 677 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 CDHR1Q96JP9 859 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 UIMC1Q96RL1 719 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 MXRA8Q9BRK3 442 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 AGXT2Q9BYV1 514 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 FAM49AQ9H0Q0 323 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-202ENST00000396828 RNF39Q9H2S5 420 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 SMARCAD1Q9H4L7 1026 aa11.78□□□□□ -0.52
NEDD8-202ENST00000396828 SH2B1Q9NRF2 756 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-202ENST00000396828 FAM217BQ9NTX9 383 aaPredicted RBP11.78□□□□□ -0.52
NEDD8-202ENST00000396828 KIAA1671Q9BY89 1806 aa11.77□□□□□ -0.52
NEDD8-202ENST00000396828 POTEB3A0JP26 581 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 STXBP3O00186 592 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 CDC27P30260 824 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 CTNNB1P35222 781 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 GTF2F1P35269 517 aaKnown RBP eCLIP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 LTBRP36941 435 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 GATMP50440 423 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 ACTR2P61160 394 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 DLX2Q07687 328 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 CAMK1Q14012 370 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 COL19A1Q14993 1142 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 PLCB4Q15147 1175 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 POTEBQ6S5H4 581 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 SYNE3Q6ZMZ3 975 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 FIBCD1Q8N539 461 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 ZNF689Q96CS4 500 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 TMX3Q96JJ7 454 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 SAMD11Q96NU1 681 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 AGO4Q9HCK5 861 aaKnown RBP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 JPH1Q9HDC5 661 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 SLC9A2Q9UBY0 812 aa11.77□□□□□ -0.53
NEDD8-202ENST00000396828 V9GY48 417 aaPredicted RBP11.77□□□□□ -0.53
NEDD8-202ENST00000396828 C5orf67F2Z3F1 127 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 PI4K2BG5E9Z4 385 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 MAFGO15525 162 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 DGKIO75912 1065 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 CCNE2O96020 404 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 BMPR1AP36894 532 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 NAPAP54920 295 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 MRPS6P82932 125 aaKnown RBP11.76□□□□□ -0.53
NEDD8-202ENST00000396828 PTPROQ16827 1216 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 GJD3Q8N144 294 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 ZNF274Q96GC6 653 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-202ENST00000396828 ANO3Q9BYT9 981 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 TMX1Q9H3N1 280 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 CDHR5Q9HBB8 845 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 ALG13Q9NP73 1137 aaKnown RBP11.76□□□□□ -0.53
NEDD8-202ENST00000396828 RIC8AQ9NPQ8 531 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 TPCN1Q9ULQ1 816 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 NAP1L2Q9ULW6 460 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-202ENST00000396828 ADGRA3Q8IWK6 1321 aa11.76□□□□□ -0.53
NEDD8-202ENST00000396828 KLF18A0A0U1RQI7 1052 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 SMCO2A6NFE2 343 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 FAM86B1E9PN63 330 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 DDX39AO00148 427 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 LINC01565O15544 149 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 ATG7O95352 703 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 FAM86B2P0C5J1 330 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 DNAJB1P25685 340 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 ADD1P35611 737 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 PLA2G5P39877 138 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 CLK2P49760 499 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 APOBRQ0VD83 1088 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 HYAL1Q12794 435 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 BTG3Q14201 252 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 CLUL1Q15846 466 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 RTN1Q16799 776 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 TMEM266Q2M3C6 531 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 TIGD5Q53EQ6 642 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 CEP55Q53EZ4 464 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 TMEM31Q5JXX7 168 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 TSHZ1Q6ZSZ6 1077 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 EP400NLQ6ZTU2 488 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 CLP1Q92989 425 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 PABPC5Q96DU9 382 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 LARP6Q9BRS8 491 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 SLKQ9H2G2 1235 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 NSUN3Q9H649 340 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 CLDND1Q9NY35 253 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 PADI3Q9ULW8 664 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 TRPC6Q9Y210 931 aa11.75□□□□□ -0.53
NEDD8-202ENST00000396828 MRPL42Q9Y6G3 142 aaKnown RBP11.75□□□□□ -0.53
NEDD8-202ENST00000396828 IGKV6D-21A0A0A0MT36 114 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 MEIS1O00470 390 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 DHX15O43143 795 aaKnown RBP11.74□□□□□ -0.53
NEDD8-202ENST00000396828 ZBTB43O43298 467 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 GPR37L1O60883 481 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 PPFIA3O75145 1194 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 ATP4AP20648 1035 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 STAT5BP51692 787 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 EVCP57679 992 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 ME3Q16798 604 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 CTC1Q2NKJ3 1217 aa11.74□□□□□ -0.53
NEDD8-202ENST00000396828 JAKMIP3Q5VZ66 844 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms