RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 AKAP3O75969 853 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 AFPP02771 609 aaKnown RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 EXOC3L4Q17RC7 722 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 KNOP1Q1ED39 458 aaKnown RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 GPATCH4Q5T3I0 446 aaKnown RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 PLCD3Q8N3E9 789 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 TPCN2Q8NHX9 752 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 P2RX7Q99572 595 aaKnown RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 BHMG1C9JSJ3 638 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 TOM1O60784 492 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 GTF2A1P52655 376 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 PPARDQ03181 441 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 SPIRE1Q08AE8 756 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 PABPC4Q13310 644 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 CRY2Q49AN0 593 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 ZNF473Q8WTR7 871 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 CCT8L2Q96SF2 557 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 DDX47Q9H0S4 455 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 NENFQ9UMX5 172 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 BZW2Q9Y6E2 419 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 CYP3A7-CYP3A51PA0A087WV96 503 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 MEFVO15553 781 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 ITGA4P13612 1032 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 CYP3A7P24462 503 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 HPDP32754 393 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 FLT3P36888 993 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 PDE4CQ08493 712 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 QRICH1Q2TAL8 776 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 DCAF17Q5H9S7 520 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 EPM2AIP1Q7L775 607 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 SFR1Q86XK3 245 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 SUGP1Q8IWZ8 645 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 EIF1ADQ8N9N8 165 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 IPO4Q8TEX9 1081 aaKnown RBP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.89□□□□□ -0.19
SHMT1-205ENST00000395684 REEP2Q9BRK0 252 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 ANO3Q9BYT9 981 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 CENPHQ9H3R5 247 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 SIX2Q9NPC8 291 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 PCDHA1Q9Y5I3 950 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 ATAD5Q96QE3 1844 aa13.89□□□□□ -0.19
SHMT1-205ENST00000395684 MPHOSPH10O00566 681 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 SPATA31C1P0DKV0 1188 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 XRCC5P13010 732 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 PRKCIP41743 596 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 CASP4P49662 377 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 CUL1Q13616 776 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 EPHA7Q15375 998 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 GJB7Q6PEY0 223 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 KCNV1Q6PIU1 500 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 NLRP14Q86W24 1093 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 MYCBPAPQ8TBZ2 947 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 MBOAT7Q96N66 472 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 NAP1L4Q99733 375 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.88□□□□□ -0.199e-6■□□□□ 9.3
SHMT1-205ENST00000395684 NOC2LQ9Y3T9 749 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 ARFGEF1Q9Y6D6 1849 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 C6orf229H3BNL8 230 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 PGRMC1O00264 195 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 HNRNPH1P31943 449 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 FNTAP49354 379 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 LRIG3Q6UXM1 1119 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 OTUD6BQ8N6M0 293 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 ETNPPLQ8TBG4 499 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 CALR3Q96L12 384 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 PAGR1Q9BTK6 254 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 STXBP5LQ9Y2K9 1186 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 CAPN7Q9Y6W3 813 aa13.88□□□□□ -0.19
SHMT1-205ENST00000395684 ATXN2Q99700 1313 aaKnown RBP13.88□□□□□ -0.19
SHMT1-205ENST00000395684 TMCO5BA8MYB1 307 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 RSPH10B2B2RC85 870 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 MEIS2O14770 477 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 RSPH10BP0C881 870 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 JAM2P57087 298 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 HDLBPQ00341 1268 aaKnown RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 ZNF844Q08AG5 666 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 KCNA1Q09470 495 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 PRR16Q569H4 304 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SLFN11Q7Z7L1 901 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SYT2Q8N9I0 419 aaPredicted RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 CRYGNQ8WXF5 182 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 AMACRQ9UHK6 382 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 GCOM1H8Y6P7 765 aaPredicted RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 KRIT1O00522 736 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 DDX3XO00571 662 aaKnown RBP eCLIP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 PDXKO00764 312 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 RAD21O60216 631 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 FLOT1O75955 427 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 MYZAPP0CAP1 466 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 GUCY2CP25092 1073 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 IFI16Q16666 785 aaKnown RBP13.87□□□□□ -0.19
SHMT1-205ENST00000395684 TCERG1LQ5VWI1 586 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 FAM196AQ6ZSG2 479 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 PEX26Q7Z412 305 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SLFN12Q8IYM2 578 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 CERS5Q8N5B7 392 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 SLC35C1Q96A29 364 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 USP40Q9NVE5 1235 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 DNM3Q9UQ16 869 aa13.87□□□□□ -0.19
SHMT1-205ENST00000395684 DAPK3O43293 454 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms