RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CKAP2LQ8IYA6 745 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 RPUSD2Q8IZ73 545 aaKnown RBP24.44■■□□□ 1.5
CLN3-207ENST00000395653 PCDHA12Q9UN75 941 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 KAT6AQ92794 2004 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 ZNF862O60290 1169 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 PFKMP08237 780 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 C9orf50Q5SZB4 431 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 C16orf59Q7L2K0 433 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 TMEM60Q9H2L4 133 aa24.44■■□□□ 1.5
CLN3-207ENST00000395653 EML1O00423 815 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 THPOP40225 353 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 PRKCEQ02156 737 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 SHHQ15465 462 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 ZNF174Q15697 407 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 UGCGQ16739 394 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 ZNF618Q5T7W0 954 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 TRAF7Q6Q0C0 670 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 RPAINQ86UA6 219 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 TTC12Q9H892 705 aaPredicted RBP24.43■■□□□ 1.5
CLN3-207ENST00000395653 CEP131Q9UPN4 1083 aa24.43■■□□□ 1.5
CLN3-207ENST00000395653 WDR81Q562E7 1941 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 MYH9P35579 1960 aaKnown RBP24.42■■□□□ 1.5
CLN3-207ENST00000395653 OATP04181 439 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 RPLP2P05387 115 aaKnown RBP24.42■■□□□ 1.5
CLN3-207ENST00000395653 TXKP42681 527 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 TOB1P50616 345 aaPredicted RBP24.42■■□□□ 1.5
CLN3-207ENST00000395653 EPHA7Q15375 998 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 RILPL1Q5EBL4 403 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 TMEM240Q5SV17 173 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 TRAPPC12Q8WVT3 735 aa24.42■■□□□ 1.5
CLN3-207ENST00000395653 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.42■■□□□ 1.53e-6■□□□□ 10.1
CLN3-207ENST00000395653 ZBTB42B2RXF5 422 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 OR52Z1P0C646 297 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 ACRP10323 421 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 PSMC5P62195 406 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 NCAPH2Q6IBW4 605 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 RUFY4Q6ZNE9 571 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 VWCEQ96DN2 955 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 NRBP2Q9NSY0 501 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 PCDHA2Q9Y5H9 948 aa24.41■■□□□ 1.5
CLN3-207ENST00000395653 DKC1O60832 514 aaKnown RBP eCLIP24.4■■□□□ 1.5
CLN3-207ENST00000395653 P4HBP07237 508 aaKnown RBP24.4■■□□□ 1.5
CLN3-207ENST00000395653 NBR1Q14596 966 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 XKR3Q5GH77 459 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 MTHFD1LQ6UB35 978 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 ZNF365Q70YC5 407 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 RSPH3Q86UC2 560 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 BANK1Q8NDB2 785 aa24.4■■□□□ 1.5
CLN3-207ENST00000395653 RSPH10B2B2RC85 870 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 RSPH10BP0C881 870 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 SYT1P21579 422 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 QARSP47897 775 aaKnown RBP24.39■■□□□ 1.5
CLN3-207ENST00000395653 LRIT3Q3SXY7 679 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 TRMT1LQ7Z2T5 733 aaKnown RBP24.39■■□□□ 1.5
CLN3-207ENST00000395653 DEFB128Q7Z7B8 93 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 FOXD4L1Q9NU39 408 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 PCDHB6Q9Y5E3 794 aa24.39■■□□□ 1.5
CLN3-207ENST00000395653 LAMA3Q16787 3333 aa24.39■■□□□ 1.49
CLN3-207ENST00000395653 SCN5AQ14524 2016 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 SMIM35A0A1B0GVV1 85 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 VPS37CA5D8V6 355 aaPredicted RBP24.38■■□□□ 1.49
CLN3-207ENST00000395653 FGBP02675 491 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 KLRC1P26715 233 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 GPNMBQ14956 572 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 FAM26DQ5JW98 314 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 BRAPQ7Z569 592 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 C4orf32Q8N8J7 132 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 ZBTB10Q96DT7 871 aa24.38■■□□□ 1.49
CLN3-207ENST00000395653 RNPC3Q96LT9 517 aaKnown RBP24.38■■□□□ 1.49
CLN3-207ENST00000395653 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.38■■□□□ 1.49
CLN3-207ENST00000395653 STBD1O95210 358 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 C22orf31O95567 290 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 CXCL10P02778 98 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 MBTPS1Q14703 1052 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 RASIP1Q5U651 963 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 NEK9Q8TD19 979 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 DNAJB3Q8WWF6 145 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 HERVK_113Q902F9 699 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 LXNQ9BS40 222 aa24.37■■□□□ 1.49
CLN3-207ENST00000395653 NIFKQ9BYG3 293 aaKnown RBP24.37■■□□□ 1.49
CLN3-207ENST00000395653 LAD1O00515 517 aa24.36■■□□□ 1.49
CLN3-207ENST00000395653 NBNO60934 754 aa24.36■■□□□ 1.49
CLN3-207ENST00000395653 CTSHP09668 335 aa24.36■■□□□ 1.49
CLN3-207ENST00000395653 C4orf19Q8IY42 314 aa24.36■■□□□ 1.49
CLN3-207ENST00000395653 MTIF3Q9H2K0 278 aaKnown RBP24.36■■□□□ 1.49
CLN3-207ENST00000395653 SEPT9Q9UHD8 586 aaPredicted RBP24.36■■□□□ 1.49
CLN3-207ENST00000395653 MAGEB2O15479 319 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 HSP90AA1P07900 732 aaKnown RBP24.35■■□□□ 1.49
CLN3-207ENST00000395653 ACTN1P12814 892 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 PTGDRQ13258 359 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 TARBP2Q15633 366 aaKnown RBP24.35■■□□□ 1.49
CLN3-207ENST00000395653 DYDC2Q96IM9 177 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 HSD17B14Q9BPX1 270 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 EIF2AK1Q9BQI3 630 aaKnown RBP24.35■■□□□ 1.49
CLN3-207ENST00000395653 FTOQ9C0B1 505 aaKnown RBP eCLIP24.35■■□□□ 1.49
CLN3-207ENST00000395653 FAM49AQ9H0Q0 323 aaPredicted RBP24.35■■□□□ 1.49
CLN3-207ENST00000395653 ZSWIM4Q9H7M6 989 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 RGL1Q9NZL6 768 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 POTEMA6NI47 508 aa24.35■■□□□ 1.49
CLN3-207ENST00000395653 MRPS6P82932 125 aaKnown RBP24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms