RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 KCNH2Q12809 1159 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 DALRD3Q5D0E6 543 aaKnown RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 CACNA2D4Q7Z3S7 1137 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 KCTD17Q8N5Z5 321 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 IL31RAQ8NI17 732 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 LSM14BQ9BX40 385 aaKnown RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 IFIH1Q9BYX4 1025 aaKnown RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 ZMYM2Q9UBW7 1377 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 SRGAP2O75044 1071 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 AKAP3O75969 853 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 CC2D1AQ6P1N0 951 aaPredicted RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 JDP2Q8WYK2 163 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 FIZ1Q96SL8 496 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 RSPH14Q9UHP6 348 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 FEZ2Q9UHY8 353 aaPredicted RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 FAM184BQ9ULE4 1060 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 RPTORQ8N122 1335 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 ANKRD65E5RJM6 399 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 IPO5O00410 1097 aaKnown RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 TGFB1I1O43294 461 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 GCNT3O95395 438 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 POLR2FP61218 127 aaKnown RBP15.36■□□□□ 0.05
SNCA-204ENST00000394989 KIF5AQ12840 1032 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 SPA17Q15506 151 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 HOOK2Q96ED9 719 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 PNKPQ96T60 521 aa15.36■□□□□ 0.05
SNCA-204ENST00000394989 TBCAO75347 108 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 SETQ01105 290 aaPredicted RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 GFPT1Q06210 699 aaPredicted RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 ARHGAP27Q6ZUM4 889 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 PRPF38AQ8NAV1 312 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 NOA1Q8NC60 698 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 EHBP1Q8NDI1 1231 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 MXRA8Q9BRK3 442 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 GANQ9H2C0 597 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 TYW1Q9NV66 732 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 LCMT1Q9UIC8 334 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 CAPN6Q9Y6Q1 641 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 WDR46O15213 610 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 SASH3O75995 380 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 NMT1P30419 496 aaKnown RBP15.35■□□□□ 0.05
SNCA-204ENST00000394989 CASP4P49662 377 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 FRMD5Q7Z6J6 570 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 EHMT1Q9H9B1 1298 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 SALL4Q9UJQ4 1053 aa15.35■□□□□ 0.05
SNCA-204ENST00000394989 FRMPD4Q14CM0 1322 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 TBC1D8O95759 1140 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 ZC2HC1CQ53FD0 456 aaPredicted RBP15.34■□□□□ 0.05
SNCA-204ENST00000394989 SAMD7Q7Z3H4 446 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 SECISBP2LQ93073 1101 aaKnown RBP15.34■□□□□ 0.05
SNCA-204ENST00000394989 WDR11Q9BZH6 1224 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 KIAA1683Q9H0B3 1180 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 DEF6Q9H4E7 631 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 SAR1BQ9Y6B6 198 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 AKR1B10O60218 316 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 NR3C1P04150 777 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 MUM1L1Q5H9M0 696 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 MSANTD4Q8NCY6 345 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 BANK1Q8NDB2 785 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 SYN2Q92777 582 aaPredicted RBP15.34■□□□□ 0.05
SNCA-204ENST00000394989 MLXIPQ9HAP2 919 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 KCNH7Q9NS40 1196 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.34■□□□□ 0.05
SNCA-204ENST00000394989 ARMCX3Q9UH62 379 aaPredicted RBP15.34■□□□□ 0.05
SNCA-204ENST00000394989 SRCAPQ6ZRS2 3230 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 SSU72P8A0A1W2PR75 194 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CTAGE15A4D2H0 777 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CLIC2O15247 247 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CTAGE8P0CG41 777 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 ACTN1P12814 892 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CTAGE6Q86UF2 777 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 KSR1Q8IVT5 923 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CTAGE4Q8IX94 777 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 CPXCR1Q8N123 301 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 LPAR1Q92633 364 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 LXNQ9BS40 222 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 TSGA10Q9BZW7 698 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 SLC38A10Q9HBR0 1119 aa15.34■□□□□ 0.05
SNCA-204ENST00000394989 DDX39AO00148 427 aaKnown RBP15.33■□□□□ 0.04
SNCA-204ENST00000394989 DHX15O43143 795 aaKnown RBP15.33■□□□□ 0.04
SNCA-204ENST00000394989 CALUO43852 315 aaPredicted RBP15.33■□□□□ 0.04
SNCA-204ENST00000394989 GAP43P17677 238 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 LMAN1P49257 510 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 ZNF131P52739 623 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 GHRHRQ02643 423 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 TNIP1Q15025 636 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 EPHA7Q15375 998 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 MYCT1Q8N699 235 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 MMS19Q96T76 1030 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 TEKT3Q9BXF9 490 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 RAVER2Q9HCJ3 691 aaKnown RBP15.33■□□□□ 0.04
SNCA-204ENST00000394989 RBAK-RBAKDNI3L0D1 243 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 SLC9A1P19634 815 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 MUTP22033 750 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 MRPS9P82933 396 aaKnown RBP15.33■□□□□ 0.04
SNCA-204ENST00000394989 SFMBT2Q5VUG0 894 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 NACC1Q96RE7 527 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 RIT2Q99578 217 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 HOMER2Q9NSB8 354 aa15.33■□□□□ 0.04
SNCA-204ENST00000394989 PKD2L1Q9P0L9 805 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms