RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CLMNQ96JQ2 1002 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ATP6V1G3Q96LB4 118 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 NUP58Q9BVL2 599 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ZNF341Q9BYN7 854 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 CENPHQ9H3R5 247 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 GDF3Q9NR23 364 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 COBLO75128 1261 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 TACC1O75410 805 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 ASNSP08243 561 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 EEF1GP26641 437 aaKnown RBP12.21□□□□□ -0.45
CUX1-204ENST00000393824 XRCC4Q13426 336 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 CCDC178Q5BJE1 867 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 SLFN13Q68D06 897 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 IFT20Q8IY31 132 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 PIK3R5Q8WYR1 880 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 CYFIP2Q96F07 1278 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 OSBPL9Q96SU4 736 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 OSBPL7Q9BZF2 842 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 ZNHIT6Q9NWK9 470 aaKnown RBP12.21□□□□□ -0.45
CUX1-204ENST00000393824 TPX2Q9ULW0 747 aaKnown RBP12.21□□□□□ -0.45
CUX1-204ENST00000393824 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 SCN4AP35499 1836 aa12.21□□□□□ -0.45
CUX1-204ENST00000393824 MACROD2A1Z1Q3 448 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 CTNND1O60716 968 aaKnown RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 PPP1R11O60927 126 aaPredicted RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 DNM2P50570 870 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 VGLL4Q14135 290 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 NPY5RQ15761 445 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 LACTB2Q53H82 288 aaPredicted RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 PDXDC2PQ6P474 469 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 ARFGAP2Q8N6H7 521 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 NOC3LQ8WTT2 800 aaKnown RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 ZC3H15Q8WU90 426 aaKnown RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 TNFRSF25Q93038 417 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 ITFG2Q969R8 447 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 CCDC43Q96MW1 224 aaKnown RBP12.21□□□□□ -0.46
CUX1-204ENST00000393824 PIGSQ96S52 555 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 TMX2Q9Y320 296 aa12.21□□□□□ -0.46
CUX1-204ENST00000393824 DNM1LO00429 736 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 MGRN1O60291 552 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 PTPRAP18433 802 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 KIF5BP33176 963 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 SLC1A4P43007 532 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 CLNS1AP54105 237 aaKnown RBP12.2□□□□□ -0.46
CUX1-204ENST00000393824 ZBED6P86452 979 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 GRIK3Q13003 919 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 CCDC96Q2M329 555 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 TTC38Q5R3I4 469 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 C8orf74Q6P047 294 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 SCYL3Q8IZE3 742 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 P3H4Q92791 437 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 THAP9Q9H5L6 903 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 FBXO28Q9NVF7 368 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 HYOU1Q9Y4L1 999 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 PPP2R3BQ9Y5P8 575 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 USP17L10C9JJH3 530 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 E7EVH7 732 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 USO1O60763 962 aaKnown RBP12.2□□□□□ -0.46
CUX1-204ENST00000393824 MYL1P05976 194 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 PAFAH1B1P43034 410 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 INHBEP58166 350 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 SPP2Q13103 211 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 MTMR2Q13614 643 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 ANKRD20A8PQ5CZ79 823 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 ARL6IP4Q66PJ3 421 aaKnown RBP12.2□□□□□ -0.46
CUX1-204ENST00000393824 IQCDQ96DY2 449 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 BORCS6Q96GS4 357 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 ZNF408Q9H9D4 720 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 JMJD4Q9H9V9 463 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 AGPAT5Q9NUQ2 364 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 SNCAIPQ9Y6H5 919 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 ZHX2Q9Y6X8 837 aa12.2□□□□□ -0.46
CUX1-204ENST00000393824 ATAD5Q96QE3 1844 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 GMNCA6NCL1 334 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 ANKRD33BA6NCL7 494 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 FAM205CA6NFA0 338 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 PAK2Q13177 524 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 SUPT20HL1Q3ZLR7 823 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 EARS2Q5JPH6 523 aaKnown RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 FAM83BQ5T0W9 1011 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 DCAF15Q66K64 600 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 PNMA8AQ86V59 439 aaPredicted RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 ADGRF4Q8IZF3 695 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 CCDC155Q8N6L0 562 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 GMCL1P1Q8NEA9 526 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 SH2D4AQ9H788 454 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 BATF3Q9NR55 127 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 RNF14Q9UBS8 474 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 CAPN6Q9Y6Q1 641 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 BRCA2P51587 3418 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 C5orf60A6NFR6 353 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 ZNF263O14978 683 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 RPN1P04843 607 aaKnown RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 LONP1P36776 959 aaKnown RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 PRCPP42785 496 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 CYP27A1Q02318 531 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 KCNB1Q14721 858 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 SPA17Q15506 151 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 FIGNQ5HY92 759 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms