RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 NR2F2P24468 414 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SREBF1P36956 1147 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 PAFAH1B1P43034 410 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 EDRF1Q3B7T1 1238 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 GPIHBP1Q8IV16 184 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 MMS19Q96T76 1030 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 CRACR2AQ9BSW2 395 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 SH2D4AQ9H788 454 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 HERC5Q9UII4 1024 aaKnown RBP10.59□□□□□ -0.71
COL6A3-204ENST00000392003 DUSP10Q9Y6W6 482 aa10.59□□□□□ -0.71
COL6A3-204ENST00000392003 NKRFO15226 690 aaKnown RBP eCLIP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 TCP1P17987 556 aaKnown RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 RPL13P26373 211 aaKnown RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 RAPGEF1Q13905 1077 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 FAM83BQ5T0W9 1011 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 CATSPER3Q86XQ3 398 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 SCFD1Q8WVM8 642 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 NOX5Q96PH1 765 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 MOCS3O95396 460 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 HOXA13P31271 388 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 STAT2P52630 851 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 WDR93Q6P2C0 686 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 SYT2Q8N9I0 419 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 ETNPPLQ8TBG4 499 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 FAM151AQ8WW52 585 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 SYN2Q92777 582 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 CCDC102AQ96A19 550 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 FAXDC2Q96IV6 333 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 PURBQ96QR8 312 aaKnown RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 GOPCQ9HD26 462 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 ARMCX3Q9UH62 379 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-204ENST00000392003 L1RE1Q9UN81 338 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 HYOU1Q9Y4L1 999 aa10.58□□□□□ -0.72
COL6A3-204ENST00000392003 MAP2K7O14733 419 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 NEBLO76041 1014 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CFBP00751 764 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SLC12A3P55017 1021 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CYP4A11Q02928 519 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TNIP1Q15025 636 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ASIC2Q16515 512 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SIAH1Q8IUQ4 282 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TRIM59Q8IWR1 403 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CCDC155Q8N6L0 562 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 PROCA1Q8NCQ7 364 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 BAP1Q92560 729 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SPAG5Q96R06 1193 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TMEM39BQ9GZU3 492 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 MLXIPQ9HAP2 919 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 PRR12Q9ULL5 1215 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SCAF8Q9UPN6 1271 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 RABGAP1Q9Y3P9 1069 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ADAMTSL1Q8N6G6 1762 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 RASSF7Q02833 373 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CXCL9Q07325 125 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 KLHL30Q0D2K2 578 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 KCNMA1Q12791 1236 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ZSCAN26Q16670 478 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 KNOP1Q1ED39 458 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SWT1Q5T5J6 900 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TCERG1LQ5VWI1 586 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CCDC174Q6PII3 467 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 BTNL9Q6UXG8 535 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SFR1Q86XK3 245 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CHURC1Q8WUH1 139 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 PDE11AQ9HCR9 933 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SNX12Q9UMY4 172 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TARSL2A2RTX5 802 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ZNF263O14978 683 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 COQ9O75208 318 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 FAM13AO94988 1023 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 VIL1P09327 827 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CIITAP33076 1130 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ARID5AQ03989 594 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 GIT2Q14161 759 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 CASP8Q14790 479 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ENOX2Q16206 610 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 MUM1L1Q5H9M0 696 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 RNF10Q8N5U6 811 aaKnown RBP10.57□□□□□ -0.72
COL6A3-204ENST00000392003 GOLGA6L1Q8N7Z2 621 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 TSKSQ9UJT2 592 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 SYNPO2Q9UMS6 1093 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 ZNF232Q9UNY5 417 aa10.57□□□□□ -0.72
COL6A3-204ENST00000392003 GREB1LQ9C091 1923 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 GCOM1H8Y6P7 765 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 LCA5LO95447 670 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 POLR2MP0CAP2 368 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 EPB41P11171 864 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 MARSP56192 900 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 KCNH2Q12809 1159 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 KCTD17Q8N5Z5 321 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 REEP2Q9BRK0 252 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 FGFBP2Q9BYJ0 223 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 BHMT2Q9H2M3 363 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 KCTD10Q9H3F6 313 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 METTL14Q9HCE5 456 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 PCDHA2Q9Y5H9 948 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ATRNL1Q5VV63 1379 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 FAM86B1E9PN63 330 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 MSH4O15457 936 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms