RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PODXLO00592 558 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 TMED1Q13445 227 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 MTBPQ96DY7 904 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 FTCDO95954 541 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 ACAD11Q709F0 780 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 FSD1LQ9BXM9 530 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 PCDHA5Q9Y5H7 936 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 WDR62O43379 1518 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 RWDD2BP57060 319 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 NSUN2Q08J23 767 aaKnown RBP eCLIP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 CAPRIN1Q14444 709 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 TBC1D10BQ4KMP7 808 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 PDXDC2PQ6P474 469 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 EXT2Q93063 718 aa13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 RRP15Q9Y3B9 282 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-204ENST00000389857 MEIS1O00470 390 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SPAG7O75391 227 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 IMPG1Q17R60 797 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ZWILCHQ9H900 591 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 GINM1Q9NU53 330 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 WDR91A4D1P6 747 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ZBED6P86452 979 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 TNFAIP2Q03169 654 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SCARA5Q6ZMJ2 495 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ARHGEF25Q86VW2 580 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 TRIML2Q8N7C3 387 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 BANK1Q8NDB2 785 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 LSG1Q9H089 658 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SYCE1LA8MT33 242 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 PTK2BQ14289 1009 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SZRD1Q7Z422 152 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 KIF17Q9P2E2 1029 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 KPNA7A9QM74 516 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 KRT37O76014 449 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ANP32DO95626 131 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 CXCR5P32302 372 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 CRKLP46109 303 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 JAK3P52333 1124 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 OSTNP61366 133 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 TRIP13Q15645 432 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 USPL1Q5W0Q7 1092 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 APOA5Q6Q788 366 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 PANX2Q96RD6 677 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 MAGEB5Q9BZ81 275 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 PI4KBQ9UBF8 816 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ABTB1Q969K4 478 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 ZMAT2Q96NC0 199 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 PIGSQ96S52 555 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 EIF4A3P38919 411 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SLCO1A2P46721 670 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 BBS9Q3SYG4 887 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 TEDDM1Q5T9Z0 273 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 COG4Q9H9E3 785 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 SERPINB13Q9UIV8 391 aa13.72□□□□□ -0.21
CCDC88C-204ENST00000389857 KIF1BO60333 1816 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 BBOX1O75936 387 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 SLFN14P0C7P3 912 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 MDM2Q00987 491 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 FLOT2Q14254 428 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 SPARCL1Q14515 664 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 TRIM55Q9BYV6 548 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 GCOM2Q9BZD3 368 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 PNMA6FA0A0J9YX94 578 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 E2F6O75461 281 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 NR1D1P20393 614 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 CACNB1Q02641 598 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 RC3H1Q5TC82 1133 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 SMYD4Q8IYR2 804 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 CA4P22748 312 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 ADORA1P30542 326 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 OCA2Q04671 838 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 KRT27Q7Z3Y8 459 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 RASGRP4Q8TDF6 673 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 N4BP2L2Q92802 583 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 K7ERI5 159 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 GDF11O95390 407 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 CDO1Q16878 200 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 FASTKD5Q7L8L6 764 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 WDR75Q8IWA0 830 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 RBM41Q96IZ5 413 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 TMEM60Q9H2L4 133 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 INTUQ9ULD6 942 aa13.71□□□□□ -0.21
CCDC88C-204ENST00000389857 ADD2P35612 726 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 SLC16A2P36021 539 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 PPP4R4Q6NUP7 873 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 MAP4K1Q92918 833 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 MTRQ99707 1265 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 STX18Q9P2W9 335 aaKnown RBP13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 COPEO14579 308 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 PRPF3O43395 683 aaKnown RBP13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 ZMYND10O75800 440 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 ATP5HO75947 161 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 ARL4CP56559 192 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 TTC13Q8NBP0 860 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 OR6B3Q8NGW1 331 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 EEF2KMTQ96G04 330 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 SH3GLB2Q9NR46 395 aa13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 CHCHD3Q9NX63 227 aaKnown RBP13.71□□□□□ -0.22
CCDC88C-204ENST00000389857 SYNGAP1Q96PV0 1343 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms