RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 POTEFA5A3E0 1075 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 MARCH6O60337 910 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 GAS7O60861 476 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PSMD10O75832 226 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 TDP2O95551 362 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 MMP3P08254 477 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PRPHP41219 470 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ACLYP53396 1101 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PTGDRQ13258 359 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ITGB3BPQ13352 177 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 NT5DC1Q5TFE4 455 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 LRCH2Q5VUJ6 765 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 C17orf53Q8N3J3 647 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 PDILTQ8N807 584 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 CCDC34Q96HJ3 373 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 MTMR9Q96QG7 549 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 GPR20Q99678 358 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 MTG1Q9BT17 334 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 TEKT3Q9BXF9 490 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PCDHA12Q9UN75 941 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ASGR1P07306 291 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 EN2P19622 333 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 MNX1P50219 401 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 JAK3P52333 1124 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PURAQ00577 322 aaKnown RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 MYL5Q02045 173 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PTPN11Q06124 597 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 PPP2R5CQ13362 524 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 CALCRLQ16602 461 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 HSDL1Q3SXM5 330 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ARL6IP4Q66PJ3 421 aaKnown RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 B3GNT9Q6UX72 402 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 PLPPR4Q7Z2D5 763 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 SYMPKQ92797 1274 aaKnown RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 COPS5Q92905 334 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 EPSTI1Q96J88 318 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ZFP91Q96JP5 570 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 C11orf49Q9H6J7 331 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 ZNF215Q9UL58 517 aaPredicted RBP11.39□□□□□ -0.59
VPS53-202ENST00000389040 PCDHA10Q9Y5I2 948 aa11.39□□□□□ -0.59
VPS53-202ENST00000389040 VWA3AA6NCI4 1184 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 WDR64B1ANS9 1081 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 SLC37A4O43826 429 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 DKC1O60832 514 aaKnown RBP eCLIP11.38□□□□□ -0.593e-11■■■□□ 15.6
VPS53-202ENST00000389040 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 SARSP49591 514 aaKnown RBP11.38□□□□□ -0.59
VPS53-202ENST00000389040 RGS19P49795 217 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 PDIA5Q14554 519 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 GJC2Q5T442 439 aaPredicted RBP11.38□□□□□ -0.59
VPS53-202ENST00000389040 MIS18BP1Q6P0N0 1132 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 SMARCE1Q969G3 411 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 DHX58Q96C10 678 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 RAB34Q9BZG1 259 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 SMARCAD1Q9H4L7 1026 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 AZI2Q9H6S1 392 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 MAN1B1Q9UKM7 699 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 MROH7Q68CQ1 1323 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 EMSYQ7Z589 1322 aa11.38□□□□□ -0.59
VPS53-202ENST00000389040 A0A087X0B3 334 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 IGKV6D-21A0A0A0MT36 114 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 F2P00734 622 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 PSAPP07602 524 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SLFN14P0C7P3 912 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 BMP6P22004 513 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 MCM7P33993 719 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 TERF1P54274 439 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 ACTR2P61160 394 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 LRMPQ12912 555 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 TMEM63BQ5T3F8 832 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 NFRKBQ6P4R8 1299 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 ABHD15Q6UXT9 468 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SESTD1Q86VW0 696 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 GRAMD1CQ8IYS0 662 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 TRIML1Q8N9V2 468 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 AFAP1L1Q8TED9 768 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 HAS1Q92839 578 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 LENG1Q96BZ8 264 aaPredicted RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 TOX2Q96NM4 488 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 HTATIP2Q9BUP3 242 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 HSD3B7Q9H2F3 369 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 ERAP1Q9NZ08 941 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 R3HCC1Q9Y3T6 440 aaKnown RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 A0A1W2PQ45 241 aaPredicted RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 A0A1W2PQY0 241 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 LGR5O75473 907 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SMC2O95347 1197 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 OR52Z1P0C646 297 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 TCF7P36402 384 aaPredicted RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 MORC3Q14149 939 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SNX17Q15036 470 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 TMEM266Q2M3C6 531 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 FAM160B1Q5W0V3 765 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 POTEDQ86YR6 584 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 KCTD17Q8N5Z5 321 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SLC43A3Q8NBI5 491 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 SPATA20Q8TB22 786 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 NEK9Q8TD19 979 aa11.37□□□□□ -0.59
VPS53-202ENST00000389040 CACTINQ8WUQ7 758 aaKnown RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 PAWRQ96IZ0 340 aaKnown RBP11.37□□□□□ -0.59
VPS53-202ENST00000389040 C16orf70Q9BSU1 422 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms