RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 UBAP2Q5T6F2 1119 aaKnown RBP0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 CUZD1Q86UP6 607 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 ADHFE1Q8IWW8 467 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 ARRDC4Q8NCT1 418 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 MICAL1Q8TDZ2 1067 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 THOC3Q96J01 351 aaKnown RBP0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 ZNF512BQ96KM6 892 aaPredicted RBP0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 PPP1R12CQ9BZL4 782 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 ARPP21Q9UBL0 812 aaPredicted RBP0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 PPM1HQ9ULR3 514 aa0.6□□□□□ -2.31
RNU6-540P-201ENST00000384622 ESYT3A0FGR9 886 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 PIPSLA2A3N6 862 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 FAM90A8PA6NJQ4 464 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 TMEM200CA6NKL6 621 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 GRXCR1A8MXD5 290 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 B4E1Z4 1266 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 H0Y8X5 98 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 CAMTA2O94983 1202 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 SCAF4O95104 1147 aaKnown RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 FAM90A13PP0C7W8 464 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 FAM90A24PP0C7X0 464 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 IFNGR1P15260 489 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 NPR3P17342 541 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 SCP2P22307 547 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 GSTT1P30711 240 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 RABGGTBP53611 331 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 BLOC1S1P78537 153 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 EXOSC10Q01780 885 aaKnown RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 RPL6Q02878 288 aaKnown RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 TOP3AQ13472 1001 aaPredicted RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 ZNF169Q14929 603 aaPredicted RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 TSNAXIP1Q2TAA8 658 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 AKNAD1Q5T1N1 836 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 TTBK2Q6IQ55 1244 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 CPNE8Q86YQ8 564 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 SLITRK4Q8IW52 837 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 TAB3Q8N5C8 712 aaPredicted RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 ZBTB38Q8NAP3 1195 aaPredicted RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 PLEKHO2Q8TD55 490 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 GTF3C2Q8WUA4 911 aaPredicted RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 ATXN2LQ8WWM7 1075 aaKnown RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 CASKIN2Q8WXE0 1202 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 LMLNQ96KR4 655 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 MKRN2Q9H000 416 aaKnown RBP0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 KCND1Q9NSA2 647 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 ASB6Q9NWX5 421 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 PRR13Q9NZ81 148 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 FOXJ2Q9P0K8 574 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 MARCH2Q9P0N8 246 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 SLC17A6Q9P2U8 582 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 SFMBT1Q9UHJ3 866 aa0.59□□□□□ -2.31
RNU6-540P-201ENST00000384622 A0A1W2PRX2 142 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 MGST3O14880 152 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 RBM10P98175 930 aaKnown RBP0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 HOXA4Q00056 320 aaPredicted RBP0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 LLGL1Q15334 1064 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 MRGPRG-AS1Q2M3A8 158 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 CDCA8Q53HL2 280 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 PP632Q6XCG6 107 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 NR2C2APQ86WQ0 139 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 SLC44A3Q8N4M1 653 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 OR14K1Q8NGZ2 314 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 SPRTNQ9H040 489 aaPredicted RBP0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 GJB4Q9NTQ9 266 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 REV1Q9UBZ9 1251 aa0.58□□□□□ -2.32
RNU6-540P-201ENST00000384622 A0A087WYN8 130 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 IGKV3D-20A0A0C4DH25 116 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 PMS2P1A4D2B8 440 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 FAM221BA6H8Z2 402 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 FAM90A10PA6NDY2 464 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 TNFRSF10CO14798 259 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 WNT9AO14904 365 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 NPHS1O60500 1241 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 CLEC3AO75596 197 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 TOP3BO95985 862 aaKnown RBP0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 CD3EP07766 207 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 T-ENOLP0DO92 83 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 GYPEP15421 78 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 HTR6P50406 440 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 NPEPPSP55786 919 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 JAM2P57087 298 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 RIN1Q13671 783 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 AUHQ13825 339 aaKnown RBP0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 NPY5RQ15761 445 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 SKIDA1Q1XH10 827 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 PIK3R6Q5UE93 754 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 ABHD17BQ5VST6 288 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 EEF1DP3Q658K8 133 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 HTR3DQ70Z44 454 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 KRT73Q86Y46 540 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 DDX17Q92841 729 aaKnown RBP0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 MIR1-1HGQ9H1L0 117 aa0.57□□□□□ -2.32
RNU6-540P-201ENST00000384622 COL4A4P53420 1690 aaPredicted RBP0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 C7orf72A4D263 438 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 C4orf47A7E2U8 309 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 C22orf46C9J442 243 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 HMGCRP04035 888 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 THBDP07204 575 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 RAG1P15918 1043 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 RHCEP18577 417 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms