RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 RABGAP1LQ5R372 815 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 FAM180AQ6UWF9 173 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 HEATR4Q86WZ0 1026 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 MICU2Q8IYU8 434 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 SLC35F6Q8N357 371 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 CCDC8Q9H0W5 538 aaPredicted RBP9.34□□□□□ -0.91
LIG3-202ENST00000378526 MAGEF1Q9HAY2 307 aa9.34□□□□□ -0.91
LIG3-202ENST00000378526 IARS2Q9NSE4 1012 aaKnown RBP9.34□□□□□ -0.91
LIG3-202ENST00000378526 CCNT1O60563 726 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 IL6P05231 212 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CYP2C19P33261 490 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ADARP55265 1226 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 ARMC4Q5T2S8 1044 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 RSBN1Q5VWQ0 802 aaPredicted RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 PRR23BQ6ZRT6 265 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 PYROXD1Q8WU10 500 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CNPY3Q9BT09 278 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 PIK3R4Q99570 1358 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SYNGAP1Q96PV0 1343 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SPDYE16A6NNV3 312 aaPredicted RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 RGS5O15539 181 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SUZ12Q15022 739 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 SPDYE2Q495Y8 402 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MIGA1Q8NAN2 632 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SKA1Q96BD8 255 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ING3Q9NXR8 418 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MAP3K20Q9NYL2 800 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 IQSEC3Q9UPP2 1182 aaPredicted RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 BUB1O43683 1085 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 KLHL38Q2WGJ6 581 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CREB3L3Q68CJ9 461 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 TTBK2Q6IQ55 1244 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 KLHL17Q6TDP4 642 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 PDIK1LQ8N165 341 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SUN5Q8TC36 379 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 METTL14Q9HCE5 456 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 HMG20AQ9NP66 347 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 RWDD2AQ9UIY3 292 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 NCAPD3P42695 1498 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 HFM1A2PYH4 1435 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ZMYM3Q14202 1370 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SPDYE2BA6NHP3 402 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SNTNA6NMZ2 147 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CTIFO43310 598 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 H2AFZP0C0S5 128 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 SPDYE6P0CI01 402 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 GGCXP38435 758 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 FBXW10Q5XX13 1052 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ADALQ6DHV7 355 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 H2AFVQ71UI9 128 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 POLNQ7Z5Q5 900 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 WWP1Q9H0M0 922 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 POLKQ9UBT6 870 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 GCNT3O95395 438 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 POLR2EP19388 210 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 SCP2P22307 547 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 PDE1AP54750 535 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MTTPP55157 894 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 AARS2Q5JTZ9 985 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 ANGPTL8Q6UXH0 198 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CAPN12Q6ZSI9 719 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MAGED4Q96JG8 741 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 RBM42Q9BTD8 480 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 EPC1Q9H2F5 836 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.33□□□□□ -0.92
LIG3-202ENST00000378526 PCP4L1A6NKN8 68 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MARK3P27448 753 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 COPS2P61201 443 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CLEC4FQ8N1N0 589 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 CCSER2Q9H7U1 834 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ABCB6Q9NP58 842 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ZFATQ9P243 1243 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 GAS7O60861 476 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 MED26O95402 600 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ABCB4P21439 1286 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 EIF2S3P41091 472 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 ARFIP2P53365 341 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 PDAP1Q13442 181 aaKnown RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 ATP2B3Q16720 1220 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 TTC33Q6PID6 262 aaPredicted RBP9.33□□□□□ -0.92
LIG3-202ENST00000378526 LONP2Q86WA8 852 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 COPG2Q9UBF2 871 aa9.33□□□□□ -0.92
LIG3-202ENST00000378526 ANKRD12Q6UB98 2062 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 FAM107AO95990 144 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 VIL1P09327 827 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 THOC5Q13769 683 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 BBS5Q8N3I7 341 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 ABTB2Q8N961 1025 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 SPDYE1Q8NFV5 336 aaPredicted RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 BTN3A2P78410 334 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TRAP1Q12931 704 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 ZNF530Q6P9A1 599 aaPredicted RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 RRM2BQ7LG56 351 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 WDR36Q8NI36 951 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 SNX19Q92543 992 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 VPS39Q96JC1 886 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 ATP6V1G3Q96LB4 118 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TESK2Q96S53 571 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TRIQKQ629K1 86 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 ENKURQ8TC29 256 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms