RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 RPA1P27694 616 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KRT76Q01546 638 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SETD3Q86TU7 594 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PPP1R14CQ8TAE6 165 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 WHRNQ9P202 907 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ACAT1P24752 427 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 NFKBIAP25963 317 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 FAM83BQ5T0W9 1011 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TRIM9Q9C026 710 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TCEA3O75764 348 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CALB1P05937 261 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 RASSF7Q02833 373 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SRBD1Q8N5C6 995 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SYMPKQ92797 1274 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 POLR3CQ9BUI4 534 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 VPS11Q9H270 941 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CEP170Q5SW79 1584 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ARHGEF35A5YM69 484 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 COL23A1Q86Y22 540 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SERPINB13Q9UIV8 391 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PALM3A6NDB9 673 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PIGHQ14442 188 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 INO80BQ9C086 356 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 LRGUKQ96M69 825 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 GGA1Q9UJY5 639 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SALL1Q9NSC2 1324 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KLHL29Q96CT2 875 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 GBP5Q96PP8 586 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 GARTP22102 1010 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PHKA1P46020 1223 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 BOLA3Q53S33 107 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 METTL21CQ5VZV1 264 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CAPZA3Q96KX2 299 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PITPNM3Q9BZ71 974 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 GRK2P25098 689 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PCK1P35558 622 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 FAM178BQ8IXR5 827 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 NME8Q8N427 588 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CENPKQ9BS16 269 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 IP6K2Q9UHH9 426 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 DHX40Q8IX18 779 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 RMDN1Q96DB5 314 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 DDX27Q96GQ7 796 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ERP44Q9BS26 406 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SLC24A2Q9UI40 661 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CEP104O60308 925 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 UGP2Q16851 508 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 HHIPL2Q6UWX4 724 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ZNF572Q7Z3I7 529 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 RTKN2Q8IZC4 609 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PGBD1Q96JS3 809 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PCDHA1Q9Y5I3 950 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 E7EVH7 732 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 HDAC4P56524 1084 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PPP2R2AP63151 447 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 RINT1Q6NUQ1 792 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KDM7AQ6ZMT4 941 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 MS4A14Q96JA4 679 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 RETREG1Q9H6L5 497 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TACC3Q9Y6A5 838 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 LRRIQ3A6PVS8 624 aaPredicted RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 LRRC8CQ8TDW0 803 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SYCP2Q9BX26 1530 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TTC4O95801 387 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 DR1Q01658 176 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KRT31Q15323 416 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ANKEF1Q9NU02 776 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 MKS1Q9NXB0 559 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PALD1Q9ULE6 856 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KLHL38Q2WGJ6 581 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SEPT14Q6ZU15 432 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 KCNQ3O43525 872 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 NOL3O60936 208 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TCERG1LQ5VWI1 586 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 PDE11AQ9HCR9 933 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SSU72Q9NP77 194 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ZFYVE16Q7Z3T8 1539 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CYP2C9P11712 490 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 MDH1P40925 334 aaKnown RBP5.32□□□□□ -1.56
PCDH9-201ENST00000377861 FAM47CQ5HY64 1035 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 TMEM179Q6ZVK1 233 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CNKSR1Q969H4 720 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SEPT3Q9UH03 358 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 MBD4O95243 580 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 NCAPH2Q6IBW4 605 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ARMCX2Q7L311 632 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 CYTH2Q99418 400 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 ATP1A3P13637 1013 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 SEPT6Q14141 434 aa5.32□□□□□ -1.56
PCDH9-201ENST00000377861 B4E1Z4 1266 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 AASDHQ4L235 1098 aaPredicted RBP5.31□□□□□ -1.56
PCDH9-201ENST00000377861 MATR3P43243 847 aaKnown RBP eCLIP5.31□□□□□ -1.56
PCDH9-201ENST00000377861 DPCR1Q3MIW9 517 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 SLF1Q9BQI6 1058 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 NYAP2Q9P242 653 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 FAM8A1Q9UBU6 413 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 CCNG2Q16589 344 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 NLRP10Q86W26 655 aa5.31□□□□□ -1.56
PCDH9-201ENST00000377861 PALM2Q8IXS6 379 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms