RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 TDRD3Q9H7E2 651 aaKnown RBP10.58□□□□□ -0.72
TRIM39-202ENST00000376659 GDF3Q9NR23 364 aa10.58□□□□□ -0.72
TRIM39-202ENST00000376659 ADAM21Q9UKJ8 722 aa10.58□□□□□ -0.72
TRIM39-202ENST00000376659 GTPBP10A4D1E9 387 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 FGFR1OPO95684 399 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 PTGER2P43116 358 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 SPDYE2Q495Y8 402 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 RINT1Q6NUQ1 792 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 FBXO11Q86XK2 927 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 SPATA4Q8NEY3 305 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 TBC1D5Q92609 795 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 LSM14BQ9BX40 385 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 USP20Q9Y2K6 914 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 UBE4BO95155 1302 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 MACROD2A1Z1Q3 448 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 MPHOSPH10O00566 681 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 DHX15O43143 795 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 BMP3P12645 472 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 MUTP22033 750 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 KCNH2Q12809 1159 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 CCDC65Q8IXS2 484 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 GSPT2Q8IYD1 628 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 ACER1Q8TDN7 264 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 CAVIN3Q969G5 261 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 TBC1D7Q9P0N9 293 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 DMGDHQ9UI17 866 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 PHF20L1A8MW92 1017 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 ACTN1P12814 892 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 IDEP14735 1019 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 CASP4P49662 377 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 SPP2Q13103 211 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 PRR16Q569H4 304 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 CCDC42Q96M95 316 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 TUFT1Q9NNX1 390 aa10.57□□□□□ -0.72
TRIM39-202ENST00000376659 HERC5Q9UII4 1024 aaKnown RBP10.57□□□□□ -0.72
TRIM39-202ENST00000376659 FOSP01100 380 aaPredicted RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 KLRC1P26715 233 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 SLC30A10Q6XR72 485 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 CDK5RAP3Q96JB5 506 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 UIMC1Q96RL1 719 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 LRRC1Q9BTT6 524 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 NUCKS1Q9H1E3 243 aaKnown RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 COL20A1Q9P218 1284 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 HDAC9Q9UKV0 1011 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 NCANO14594 1321 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 MEIS1O00470 390 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 ZBTB39O15060 712 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 CLSTN1O94985 981 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 SLC9A1P19634 815 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 HOXA13P31271 388 aaPredicted RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 CKAP4Q07065 602 aaKnown RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 C1orf220Q5T0J3 134 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 MSL1Q68DK7 614 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 KIAA1328Q86T90 577 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 CLEC4DQ8WXI8 215 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 TSG101Q99816 390 aa10.56□□□□□ -0.72
TRIM39-202ENST00000376659 RBM12Q9NTZ6 932 aaKnown RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 TYW1Q9NV66 732 aaKnown RBP10.56□□□□□ -0.72
TRIM39-202ENST00000376659 MYCNP04198 464 aaPredicted RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 ERCC3P19447 782 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 PTK2Q05397 1052 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 KIF5AQ12840 1032 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 NELFCDQ8IXH7 590 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 NEK11Q8NG66 645 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 PSMD1Q99460 953 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 SELENOOQ9BVL4 669 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 ZBTB21Q9ULJ3 1066 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 STK24Q9Y6E0 443 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 UCHL3P15374 230 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 TSEN2Q8NCE0 465 aaKnown RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 LNX1Q8TBB1 728 aaPredicted RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 FAM71BQ8TC56 605 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 ZBTB9Q96C00 473 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 CAMKK2Q96RR4 588 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 MMRN2Q9H8L6 949 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 HYOU1Q9Y4L1 999 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 RASSF7Q02833 373 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 FKBP1CQ5VVH2 108 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 RSBN1LQ6PCB5 846 aaPredicted RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 CAPZA3Q96KX2 299 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 GLIS2Q9BZE0 524 aaPredicted RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 UNC45AQ9H3U1 944 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 ZNHIT6Q9NWK9 470 aaKnown RBP10.55□□□□□ -0.72
TRIM39-202ENST00000376659 RGL1Q9NZL6 768 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 FAN1Q9Y2M0 1017 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 GRIN2DO15399 1336 aa10.55□□□□□ -0.72
TRIM39-202ENST00000376659 SSC5DA1L4H1 1573 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 TRAF5O00463 557 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 NR2F2P24468 414 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 ANXA13P27216 316 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 POLR2FP61218 127 aaKnown RBP10.54□□□□□ -0.72
TRIM39-202ENST00000376659 PABPC4Q13310 644 aaKnown RBP eCLIP10.54□□□□□ -0.72
TRIM39-202ENST00000376659 ADAM9Q13443 819 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 COG2Q14746 738 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 USH1GQ495M9 461 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 SFMBT2Q5VUG0 894 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 RASGEF1CQ8N431 466 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 FAM151AQ8WW52 585 aa10.54□□□□□ -0.72
TRIM39-202ENST00000376659 SEC14L1Q92503 715 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms