RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ARHGAP44Q17R89 818 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 IQCKQ8N0W5 287 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 UHMK1Q8TAS1 419 aaKnown RBP13.27□□□□□ -0.29
CLIP3-201ENST00000360535 CEP63Q96MT8 703 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 INPP4AQ96PE3 977 aaPredicted RBP13.27□□□□□ -0.29
CLIP3-201ENST00000360535 GCNT4Q9P109 453 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 KDM3AQ9Y4C1 1321 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 SART1O43290 800 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 METTL13Q8N6R0 699 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 RBM46Q8TBY0 533 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 GANQ9H2C0 597 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 CHORDC1Q9UHD1 332 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 STRCQ7RTU9 1775 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 GNA14O95837 355 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 PON1P27169 355 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 HDLBPQ00341 1268 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 CTTNQ14247 550 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 ZC2HC1CQ53FD0 456 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 GLE1Q53GS7 698 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 KIAA0825Q8IV33 1275 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 PIK3R5Q8WYR1 880 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 ZC3H12CQ9C0D7 883 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 NEUROG2Q9H2A3 272 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 OSGEPQ9NPF4 335 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 NAGPAQ9UK23 515 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 NOC2LQ9Y3T9 749 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 TMEM110-MUSTN1A8MSY1 372 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 TBCAO75347 108 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 HLA-DOAP06340 250 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 EEF2P13639 858 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 SHMT1P34896 483 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 ZNF211Q13398 564 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 TBC1D10BQ4KMP7 808 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 SLFN13Q68D06 897 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 ZNF572Q7Z3I7 529 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 TPH2Q8IWU9 490 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 CERS5Q8N5B7 392 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 RBM17Q96I25 401 aaKnown RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 EDEM3Q9BZQ6 932 aa13.26□□□□□ -0.29
CLIP3-201ENST00000360535 COL16A1Q07092 1604 aaPredicted RBP13.26□□□□□ -0.29
CLIP3-201ENST00000360535 ABCB11O95342 1321 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 TLDC2A0PJX2 215 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 TTI1O43156 1089 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 NMT1P30419 496 aaKnown RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 HSD17B3P37058 310 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 CYP2J2P51589 502 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 ARHGAP4P98171 946 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 GIT2Q14161 759 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 KNOP1Q1ED39 458 aaKnown RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 ICE2Q659A1 982 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 IRF2BP2Q7Z5L9 587 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 TRIM51Q9BSJ1 452 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 TAF1DQ9H5J8 278 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 KCNQ5Q9NR82 932 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 PCDHGC5Q9Y5F6 944 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 PCDHA2Q9Y5H9 948 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 DDX60LQ5H9U9 1706 aaKnown RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 SPDYE3A6NKU9 549 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 GCOM1H8Y6P7 765 aaPredicted RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 MYZAPP0CAP1 466 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 SMARCA1P28370 1054 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 RC3H1Q5TC82 1133 aaKnown RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 GLYCTKQ8IVS8 523 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 ATP6V1G3Q96LB4 118 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 P2RX7Q99572 595 aaKnown RBP13.25□□□□□ -0.29
CLIP3-201ENST00000360535 PKD2L1Q9P0L9 805 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 FBXL5Q9UKA1 691 aa13.25□□□□□ -0.29
CLIP3-201ENST00000360535 RBAK-RBAKDNI3L0D1 243 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 LRRN2O75325 713 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 NR3C1P04150 777 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 H2AFZP0C0S5 128 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 IL1R1P14778 569 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 IFFO1Q0D2I5 559 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 SEPT2Q15019 361 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 H2AFVQ71UI9 128 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 MYCT1Q8N699 235 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 TBC1D22AQ8WUA7 517 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 RUSC1Q9BVN2 902 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 AIPL1Q9NZN9 384 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 NOVA2Q9UNW9 492 aaKnown RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 hCG_1984214I3L0E3 225 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 FLOT1O75955 427 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 EPB41P11171 864 aaKnown RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 USP8P40818 1118 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 SLC12A3P55017 1021 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 ORC2Q13416 577 aaPredicted RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 COG2Q14746 738 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 ZNF713Q8N859 430 aaPredicted RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 CCT8L2Q96SF2 557 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 DBNDD1Q9H9R9 158 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 RNF14Q9UBS8 474 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 ATP8A1Q9Y2Q0 1164 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 PGRMC1O00264 195 aaKnown RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 TRIM49P0CI25 452 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 TRIM49CP0CI26 452 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 POLD1P28340 1107 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 GPATCH4Q5T3I0 446 aaKnown RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 CDC42EP5Q6NZY7 148 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms