RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 USP17L22D6RA61 530 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 USP17L17D6RBQ6 530 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 USP17L19D6RCP7 530 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 USP17L20D6RJB6 530 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 SKAP2O75563 359 aaPredicted RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 TAL1P17542 331 aaPredicted RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 PSMC6P62333 389 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 USP17L24Q0WX57 530 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 ACCSLQ4AC99 568 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 FAM133BQ5BKY9 247 aaKnown RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 USP17L6PQ6QN14 398 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 TMC3Q7Z5M5 1100 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 PNMA8AQ86V59 439 aaPredicted RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 TPCN2Q8NHX9 752 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 STRCP1A6NGW2 1772 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 FOXO6A8MYZ6 492 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 F8W031 263 aaPredicted RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 PLA2G4BP0C869 781 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 ELF1P32519 619 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 BTDP43251 543 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 FXR2P51116 673 aaKnown RBP eCLIP11.06□□□□□ -0.641e-6■■■□□ 16.4
PTPRA-203ENST00000356147 PLTPP55058 493 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 DDR1Q08345 913 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 PABPC4Q13310 644 aaKnown RBP eCLIP11.06□□□□□ -0.643e-13■■■■■ 32.1
PTPRA-203ENST00000356147 NFIXQ14938 502 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 SF3B3Q15393 1217 aaKnown RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 YTHDF3Q7Z739 585 aaKnown RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 LRRC57Q8N9N7 239 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 NLRP3Q96P20 1036 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.06□□□□□ -0.643e-8■■■□□ 14.8
PTPRA-203ENST00000356147 ERVK-5Q9HDB9 667 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 MLXIPLQ9NP71 852 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 BMP2KQ9NSY1 1161 aaPredicted RBP11.06□□□□□ -0.64
PTPRA-203ENST00000356147 SNX24Q9Y343 169 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 CD2APQ9Y5K6 639 aa11.06□□□□□ -0.64
PTPRA-203ENST00000356147 SPDYE3A6NKU9 549 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RSPH10B2B2RC85 870 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 BUB1BO60566 1050 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 CLTAP09496 248 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RSPH10BP0C881 870 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RFC4P35249 363 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 IFI35P80217 286 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 NEDD9Q14511 834 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 GKAP1Q5VSY0 366 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 AEBP2Q6ZN18 517 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RAB34Q9BZG1 259 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 TMOD4Q9NZQ9 345 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 ZNF652Q9Y2D9 606 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RTCBQ9Y3I0 505 aaKnown RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 DLEC1Q9Y238 1755 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 EIF4E1BA6NMX2 242 aaKnown RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 F8VZ95 297 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 PPP1R11O60927 126 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 CHN1P15882 459 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 CUL1Q13616 776 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 PREPLQ4J6C6 727 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 COBLL1Q53SF7 1204 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 RUFY4Q6ZNE9 571 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 KCTD1Q719H9 257 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 TBC1D1Q86TI0 1168 aaPredicted RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 GLYCTKQ8IVS8 523 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 KSR1Q8IVT5 923 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 TEX11Q8IYF3 940 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 MGARPQ8TDB4 240 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 AIPL1Q9NZN9 384 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 MCM8Q9UJA3 840 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 PPP1R9AQ9ULJ8 1098 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 L3MBTL1Q9Y468 752 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 IGSF9BQ9UPX0 1349 aa11.05□□□□□ -0.64
PTPRA-203ENST00000356147 MYH14Q7Z406 1995 aaKnown RBP11.05□□□□□ -0.64
PTPRA-203ENST00000356147 TMEM110-MUSTN1A8MSY1 372 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 CETN3O15182 167 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 PON1P27169 355 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 SNAP25P60880 206 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 CYP4A11Q02928 519 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 EXOC3L4Q17RC7 722 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 TMEM119Q4V9L6 283 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 NBPF5PQ86XG9 351 aaPredicted RBP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 TATDN2Q93075 761 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 SGSM3Q96HU1 749 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 PSMD1Q99460 953 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 ELAC2Q9BQ52 826 aaKnown RBP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 KCTD10Q9H3F6 313 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 DDX3XO00571 662 aaKnown RBP eCLIP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 AKAP3O75969 853 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 DRD4P21917 467 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 SEMA3FQ13275 785 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 LRRC14Q15048 493 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 EMC10Q5UCC4 262 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 CCDC65Q8IXS2 484 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 PROM2Q8N271 834 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 FMO2Q99518 471 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 PAGR1Q9BTK6 254 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 EDEM3Q9BZQ6 932 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 NUCKS1Q9H1E3 243 aaKnown RBP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 ARMCX3Q9UH62 379 aaPredicted RBP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 ATXN2Q99700 1313 aaKnown RBP11.04□□□□□ -0.64
PTPRA-203ENST00000356147 MYH7BA7E2Y1 1941 aa11.04□□□□□ -0.64
PTPRA-203ENST00000356147 MED24O75448 989 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms