RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PTPRSQ13332 1948 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 PTPDC1A2A3K4 754 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 DCDC2CA8MYV0 355 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 GFRA2O00451 464 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 TBX1O43435 398 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 NMT2O60551 498 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 APBA3O96018 575 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SRGNP10124 158 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SNRPNP63162 240 aaKnown RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 HYAL2Q12891 473 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SQSTM1Q13501 440 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SETDB1Q15047 1291 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 YOD1Q5VVQ6 348 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 C12orf40Q86WS4 652 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SLITRK4Q8IW52 837 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 FBXO18Q8NFZ0 1043 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 BSNDQ8WZ55 320 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 ZSCAN31Q96LW9 406 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 NT5C1AQ9BXI3 368 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 CBX8Q9HC52 389 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 FAM53CQ9NYF3 392 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 FBXO2Q9UK22 296 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 PCDHGC5Q9Y5F6 944 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 TNRC18O15417 2968 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 A0A087WWV3 80 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 YDJCA8MPS7 323 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CYP2D6P10635 497 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 DRD2P14416 443 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ELNP15502 786 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 PLCD1P51178 756 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 UBE2HP62256 183 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 IFIT5Q13325 482 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 PWP1Q13610 501 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 RAB33AQ14088 237 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CBX2Q14781 532 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 KIAA1755Q5JYT7 1200 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 SNAP47Q5SQN1 464 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 RESP18Q5W5W9 173 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 FBXW10Q5XX13 1052 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 C6orf15Q6UXA7 325 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 CCDC144CPQ8IYA2 1237 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 MICALL1Q8N3F8 863 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 SRBD1Q8N5C6 995 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 BRF1Q92994 677 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GPR101Q96P66 508 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 DNAJC7Q99615 494 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ARMT1Q9H993 441 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 JPH1Q9HDC5 661 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 TMEM39AQ9NV64 488 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 TRMT112Q9UI30 125 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 PCDHA7Q9UN72 937 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 PCDHB14Q9Y5E9 798 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CYP46A1Q9Y6A2 500 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 MYH10P35580 1976 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 C5orf42Q9H799 3197 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CHD9Q3L8U1 2897 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GPR75-ASB3A0A0A6YYF3 556 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ANKRD18BA2A2Z9 1011 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 M0R082 166 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZFYP08048 801 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZBTB48P10074 688 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZNF18P17022 549 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GATA4P43694 442 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 LMNB2Q03252 620 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 PDE4BQ07343 736 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 TBX2Q13207 712 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 GRAPQ13588 217 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 FOXB2Q5VYV0 432 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GPAT2Q6NUI2 795 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 SARM1Q6SZW1 724 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 SHISA2Q6UWI4 295 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 LDHAL6AQ6ZMR3 332 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CD163Q86VB7 1156 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 FAM43AQ8N2R8 423 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 Q8N3U1 123 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZNF417Q8TAU3 575 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GRAPLQ8TC17 118 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 UBASH3BQ8TF42 649 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 FBXO41Q8TF61 875 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 ZNF587Q96SQ5 575 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 BPIFA3Q9BQP9 254 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 FSD1Q9BTV5 496 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 KRTAP9-2Q9BYQ4 174 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 CLSTN2Q9H4D0 955 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 PFDN2Q9UHV9 154 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 NOL7Q9UMY1 257 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 NIP7Q9Y221 180 aaKnown RBP eCLIP2.7□□□□□ -1.98
VPS54-202ENST00000354504 WDR33Q9C0J8 1336 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 SYCE3A1L190 88 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 KIAA1324LA8MWY0 1029 aaPredicted RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 C1QTNF9BB2RNN3 333 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 TRIM37O94972 964 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 IFNAR1P17181 557 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 MAOBP27338 520 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 GRIA2P42262 883 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 LRP8Q14114 963 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 C12orf60Q5U649 245 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 OTUD7BQ6GQQ9 843 aa2.7□□□□□ -1.98
VPS54-202ENST00000354504 APOBEC3HQ6NTF7 200 aaKnown RBP2.7□□□□□ -1.98
VPS54-202ENST00000354504 KIF6Q6ZMV9 814 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms