RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 KARSQ15046 597 aaKnown RBP24.82■■□□□ 1.56
SDC3-202ENST00000339394 TPRNQ4KMQ1 711 aa24.82■■□□□ 1.56
SDC3-202ENST00000339394 RESP18Q5W5W9 173 aa24.82■■□□□ 1.56
SDC3-202ENST00000339394 DIS3LQ8TF46 1054 aaKnown RBP24.82■■□□□ 1.56
SDC3-202ENST00000339394 ATP8B4Q8TF62 1192 aa24.82■■□□□ 1.56
SDC3-202ENST00000339394 STARD7Q9NQZ5 370 aa24.82■■□□□ 1.56
SDC3-202ENST00000339394 KIAA1024Q9UPX6 916 aa24.82■■□□□ 1.56
SDC3-202ENST00000339394 ZBTB39O15060 712 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 STBD1O95210 358 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 OATP04181 439 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 MUTP22033 750 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 CMA1P23946 247 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 TXLNAP40222 546 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 HYIQ5T013 277 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 PPP1R13LQ8WUF5 828 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 PNMA5Q96PV4 448 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 SENP6Q9GZR1 1112 aaPredicted RBP24.81■■□□□ 1.56
SDC3-202ENST00000339394 DDX19AQ9NUU7 478 aaKnown RBP24.81■■□□□ 1.56
SDC3-202ENST00000339394 FRMPD3Q5JV73 1810 aa24.81■■□□□ 1.56
SDC3-202ENST00000339394 A0A087WWV3 80 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 A0A1W2PQ27 194 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 A0A1W2PQ64 194 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 A0A1W2PQD8 194 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 GOLGA6L4A6NEF3 574 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 YWHABP31946 246 aaKnown RBP24.8■■□□□ 1.56
SDC3-202ENST00000339394 GRB10Q13322 594 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 NBPF20Q3BBV1 942 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 XKR3Q5GH77 459 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 ANO5Q75V66 913 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 BBXQ8WY36 941 aaPredicted RBP24.8■■□□□ 1.56
SDC3-202ENST00000339394 CALML4Q96GE6 196 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 PLIN2Q99541 437 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 PANK2Q9BZ23 570 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 TRPC6Q9Y210 931 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 GRIN2DO15399 1336 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 KDM3AQ9Y4C1 1321 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 TCHHQ07283 1943 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 SLC26A4O43511 780 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 COL6A1P12109 1028 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 RASSF8Q8NHQ8 419 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 PIGOQ8TEQ8 1089 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 PAWRQ96IZ0 340 aaKnown RBP24.8■■□□□ 1.56
SDC3-202ENST00000339394 CDK5RAP3Q96JB5 506 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 FAM167AQ96KS9 214 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 NACC1Q96RE7 527 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 NT5C3AQ9H0P0 336 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 NRBP2Q9NSY0 501 aa24.8■■□□□ 1.56
SDC3-202ENST00000339394 TMEM150BA6NC51 233 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 CCDC85CA6NKD9 419 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 DDX11L8A8MPP1 907 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 PRPF40AO75400 957 aaKnown RBP24.79■■□□□ 1.56
SDC3-202ENST00000339394 ITGA7Q13683 1181 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 FAM13BQ9NYF5 915 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 CCDC39Q9UFE4 941 aa24.79■■□□□ 1.56
SDC3-202ENST00000339394 A0A087X0B3 334 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 A0A1B0GVL5 298 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 HBP1O60381 514 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 GADD45BO75293 160 aaPredicted RBP24.78■■□□□ 1.56
SDC3-202ENST00000339394 TMEM119Q4V9L6 283 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 KCNK18Q7Z418 384 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 C7orf31Q8N865 590 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 SH2D3AQ9BRG2 576 aa24.78■■□□□ 1.56
SDC3-202ENST00000339394 SEPT9Q9UHD8 586 aaPredicted RBP24.78■■□□□ 1.56
SDC3-202ENST00000339394 SMIM10L2AP0DMW4 78 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 SMIM10L2BP0DMW5 78 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 XRCC6P12956 609 aaKnown RBP eCLIP24.77■■□□□ 1.56
SDC3-202ENST00000339394 INSRRP14616 1297 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 PLCG1P19174 1290 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 OTUD6AQ7L8S5 288 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 PDILTQ8N807 584 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 MRPS27Q92552 414 aaKnown RBP24.77■■□□□ 1.56
SDC3-202ENST00000339394 NIFKQ9BYG3 293 aaKnown RBP24.77■■□□□ 1.56
SDC3-202ENST00000339394 C11orf49Q9H6J7 331 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 HDAC6Q9UBN7 1215 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 DNM3Q9UQ16 869 aa24.77■■□□□ 1.56
SDC3-202ENST00000339394 A0A0U1RQG5 324 aaPredicted RBP24.76■■□□□ 1.55
SDC3-202ENST00000339394 E9PMD0 336 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 SOX10P56693 466 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 PLA2G4FQ68DD2 849 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 NFRKBQ6P4R8 1299 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 NECAB2Q7Z6G3 386 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 KCTD17Q8N5Z5 321 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 FSIP1Q8NA03 581 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 SLC43A3Q8NBI5 491 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 LRRC15Q8TF66 581 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 ANKEF1Q9NU02 776 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 SETD4Q9NVD3 440 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 KCNH3Q9ULD8 1083 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 HPSEQ9Y251 543 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 NRCAMQ92823 1304 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 ZBTB42B2RXF5 422 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 PFKFB1P16118 471 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 NPEPPSP55786 919 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 PPFIA1Q13136 1202 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 RRAGBQ5VZM2 374 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 CCDC73Q6ZRK6 1079 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 UBE2Q1Q7Z7E8 422 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 GOLPH3LQ9H4A5 285 aa24.76■■□□□ 1.55
SDC3-202ENST00000339394 FAM237AA0A1B0GTK4 181 aa24.75■■□□□ 1.55
SDC3-202ENST00000339394 ARVCFO00192 962 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms