RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MAN2A1Q16706 1144 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 ERICH1Q86X53 443 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 CCDC17Q96LX7 622 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 SYNDIG1Q9H7V2 258 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 HEY1Q9Y5J3 304 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 DNAJC8O75937 253 aaPredicted RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 ANP32DO95626 131 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 KLC3Q6P597 504 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 ARMCX2Q7L311 632 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 PYROXD1Q8WU10 500 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 TTC17Q96AE7 1141 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 KANSL2Q9H9L4 492 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 C21orf2O43822 256 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 CCDC124Q96CT7 223 aaKnown RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 IFT43Q96FT9 208 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 COG4Q9H9E3 785 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 LEMD3Q9Y2U8 911 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 PCDHA13Q9Y5I0 950 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 HSPA4LO95757 839 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 AIFM3Q96NN9 605 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 POLR3CQ9BUI4 534 aaPredicted RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 CFAP65Q6ZU64 1925 aaKnown RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 UGGT2Q9NYU1 1516 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 K7ERI5 159 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 CHEK2O96017 543 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 RXRBP28702 533 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 POLE2P56282 527 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 SLC17A8Q8NDX2 589 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 DHTKD1Q96HY7 919 aaPredicted RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 LSG1Q9H089 658 aaKnown RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 FOXP1Q9H334 677 aaPredicted RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 GTSE1Q9NYZ3 720 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 PCDHB6Q9Y5E3 794 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 SNX2O60749 519 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 CACNB2Q08289 660 aaPredicted RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 UBE3CQ15386 1083 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 FBXO18Q8NFZ0 1043 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 TRAIPQ9BWF2 469 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 SMYD3Q9H7B4 428 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 ABCC12Q96J65 1359 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 DENND3A2RUS2 1198 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 DPYSL4O14531 572 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 DR1Q01658 176 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 PSMD2Q13200 908 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 DALRD3Q5D0E6 543 aaKnown RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 FSD1LQ9BXM9 530 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 SLC7A5P2Q9GIP4 190 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 CDC23Q9UJX2 597 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 FAM196BA6NMK8 535 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 LBRQ14739 615 aaKnown RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 RNF207Q6ZRF8 634 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 KLHL29Q96CT2 875 aa13.55□□□□□ -0.24
SDC3-201ENST00000336798 RAVER2Q9HCJ3 691 aaKnown RBP13.55□□□□□ -0.24
SDC3-201ENST00000336798 MECOMQ03112 1051 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 TRIM42Q8IWZ5 723 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 ZNF513Q8N8E2 541 aaPredicted RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 KLHL8Q9P2G9 620 aaPredicted RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 TTI1O43156 1089 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 RECQLP46063 649 aaPredicted RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 KPNA2P52292 529 aaKnown RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 ESRRGP62508 458 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 NNTQ13423 1086 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 FASTKD5Q7L8L6 764 aaKnown RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 WDR48Q8TAF3 677 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 ABCC4O15439 1325 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 A0A0G2JND7 137 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 LAD1O00515 517 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 CYP21A2P08686 494 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 GRAMD1BQ3KR37 738 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 ELMOD1Q8N336 334 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 EFHD1Q9BUP0 239 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 THEGQ9P2T0 379 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 TEKT2Q9UIF3 430 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 FAM95CA0A1B0GW59 222 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 OCM2P0CE71 109 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 OCMP0CE72 109 aaPredicted RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 RAPGEF5Q92565 580 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 CPVLQ9H3G5 476 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 SAYSD1Q9NPB0 183 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 MOCS2O96007 188 aaPredicted RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 EPHB4P54760 987 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 SLC39A14Q15043 492 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 IMPG1Q17R60 797 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 ZMYM1Q5SVZ6 1142 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 TWF2Q6IBS0 349 aaKnown RBP13.54□□□□□ -0.24
SDC3-201ENST00000336798 KDELC2Q7Z4H8 507 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 RNF135Q8IUD6 432 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 THEM5Q8N1Q8 247 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 ZCWPW1Q9H0M4 648 aa13.54□□□□□ -0.24
SDC3-201ENST00000336798 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 MAP3K7O43318 606 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 E2F6O75461 281 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 ESRRAP11474 423 aaPredicted RBP13.53□□□□□ -0.24
SDC3-201ENST00000336798 HLA-DPA1P20036 260 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 NME3Q13232 169 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 FBXO41Q8TF61 875 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 OTULINQ96BN8 352 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 GSDMAQ96QA5 445 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 DRC3Q9H069 523 aa13.53□□□□□ -0.24
SDC3-201ENST00000336798 PIDD1Q9HB75 910 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms