RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PIGOQ8TEQ8 1089 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 DHTKD1Q96HY7 919 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 PDLIM2Q96JY6 352 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 APBA2Q99767 749 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 REEP2Q9BRK0 252 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 OLFML3Q9NRN5 406 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 GDAQ9Y2T3 454 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 PCDHA2Q9Y5H9 948 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 PLXNA1Q9UIW2 1896 aa16.59■□□□□ 0.25
CCDC88C-202ENST00000334448 ZNFX1Q9P2E3 1918 aaKnown RBP16.58■□□□□ 0.25
CCDC88C-202ENST00000334448 GSTTP1A0A1W2PQM5 241 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 ARHGEF35A5YM69 484 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 XRCC5P13010 732 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 PRCPP42785 496 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 STK4Q13043 487 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 XKR3Q5GH77 459 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 FAM26FQ5R3K3 315 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 PAXIP1Q6ZW49 1069 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 DYMQ7RTS9 669 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 SEPT1Q8WYJ6 367 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 HSD3B7Q9H2F3 369 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 PANK4Q9NVE7 773 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 GABBR1Q9UBS5 961 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 SEL1LQ9UBV2 794 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 PPME1Q9Y570 386 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 COL4A3BPQ9Y5P4 624 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 EMSYQ7Z589 1322 aa16.58■□□□□ 0.24
CCDC88C-202ENST00000334448 SYNRGQ9UMZ2 1314 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 TNPO2O14787 897 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 PSMA7O14818 248 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 NKRFO15226 690 aaKnown RBP eCLIP16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 AOC2O75106 756 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 TXNP10599 105 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 HOXD8P13378 290 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 ZNF18P17022 549 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 FCGRTP55899 365 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 TPM4P67936 248 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 ARHGAP1Q07960 439 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 PAK1Q13153 545 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 ANO5Q75V66 913 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 OTUD6AQ7L8S5 288 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 EEPD1Q7L9B9 569 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 SMYD4Q8IYR2 804 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 GPR20Q99678 358 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 NRBP1Q9UHY1 535 aa16.57■□□□□ 0.24
CCDC88C-202ENST00000334448 ZBTB39O15060 712 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 TBCAO75347 108 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 KRT18P05783 430 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 IDEP14735 1019 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 SLC26A2P50443 739 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 LACTBP83111 547 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PRKCEQ02156 737 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 ACVR2BQ13705 512 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 LAMC2Q13753 1193 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 LY6KQ17RY6 165 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 SPATA1Q5VX52 437 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 FAM160B1Q5W0V3 765 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 IQSEC1Q6DN90 963 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 SWSAP1Q6NVH7 229 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PADI6Q6TGC4 694 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PLPPR4Q7Z2D5 763 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 ANP32BQ92688 251 aaKnown RBP16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PPP1R9BQ96SB3 815 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PCYT2Q99447 389 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 MLXIPQ9HAP2 919 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 ZNF302Q9NR11 478 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 PDGFCQ9NRA1 345 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 TELO2Q9Y4R8 837 aa16.56■□□□□ 0.24
CCDC88C-202ENST00000334448 KIF20AO95235 890 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 GH1P01241 217 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 OATP04181 439 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 MAPTP10636 758 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 CCNE1P24864 410 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 CTGFP29279 349 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 MAPK7Q13164 816 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 BMT2Q1RMZ1 405 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 DUSP28Q4G0W2 176 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 CDKAL1Q5VV42 579 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 CENPPQ6IPU0 288 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 TTI2Q6NXR4 508 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 EPM2AIP1Q7L775 607 aaPredicted RBP16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 DHX37Q8IY37 1157 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 PPTC7Q8NI37 304 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 NELFBQ8WX92 580 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 KCNN1Q92952 543 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 FAM167AQ96KS9 214 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 NIFKQ9BYG3 293 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 PARVGQ9HBI0 331 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 NFE2L3Q9Y4A8 694 aa16.55■□□□□ 0.24
CCDC88C-202ENST00000334448 UBE4BO95155 1302 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 NPHP3-ACAD11A0A0J9YXS1 232 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 BICDL2A1A5D9 508 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 BACH1O14867 736 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 AP5Z1O43299 807 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 ATP4AP20648 1035 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 TCF7P36402 384 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 RTP1P59025 263 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 CCDC173Q0VFZ6 552 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 HSDL1Q3SXM5 330 aa16.54■□□□□ 0.24
CCDC88C-202ENST00000334448 HERC4Q5GLZ8 1057 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms