RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 MTIF3Q9H2K0 278 aaKnown RBP15.79■□□□□ 0.12
LIMS1-201ENST00000332345 NRBP2Q9NSY0 501 aa15.79■□□□□ 0.12
LIMS1-201ENST00000332345 TUBE1Q9UJT0 475 aa15.79■□□□□ 0.12
LIMS1-201ENST00000332345 NOL7Q9UMY1 257 aaKnown RBP15.79■□□□□ 0.12
LIMS1-201ENST00000332345 MBLAC1A4D2B0 266 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-201ENST00000332345 RSPH10B2B2RC85 870 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 NEMFO60524 1076 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 RSPH10BP0C881 870 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 ACTN1P12814 892 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 TRAPPC10P48553 1259 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 PPP2R5CQ13362 524 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 ORC2Q13416 577 aaPredicted RBP15.78■□□□□ 0.12
LIMS1-201ENST00000332345 MARCH8Q5T0T0 291 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 ZNF618Q5T7W0 954 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 MCTP1Q6DN14 999 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 B3GNT9Q6UX72 402 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 DEFB128Q7Z7B8 93 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 FAM167AQ96KS9 214 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 RNPC3Q96LT9 517 aaKnown RBP15.78■□□□□ 0.12
LIMS1-201ENST00000332345 FTOQ9C0B1 505 aaKnown RBP eCLIP15.78■□□□□ 0.12
LIMS1-201ENST00000332345 PCDHA12Q9UN75 941 aa15.78■□□□□ 0.12
LIMS1-201ENST00000332345 COL1A2P08123 1366 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 K7ELQ4 463 aaPredicted RBP15.77■□□□□ 0.12
LIMS1-201ENST00000332345 DKC1O60832 514 aaKnown RBP eCLIP15.77■□□□□ 0.12
LIMS1-201ENST00000332345 ATP4AP20648 1035 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 PDCP20941 246 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 MCM7P33993 719 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 RPAINQ86UA6 219 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 HERVK_113Q902F9 699 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 WNT8BQ93098 351 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 SNX21Q969T3 373 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 INTS4Q96HW7 963 aaKnown RBP15.77■□□□□ 0.12
LIMS1-201ENST00000332345 CEP131Q9UPN4 1083 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 PCDHA2Q9Y5H9 948 aa15.77■□□□□ 0.12
LIMS1-201ENST00000332345 SCN5AQ14524 2016 aa15.77■□□□□ 0.11
LIMS1-201ENST00000332345 KLRC1P26715 233 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 ZNF174Q15697 407 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 MTHFD1LQ6UB35 978 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 OTOP2Q7RTS6 562 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 TRMT1LQ7Z2T5 733 aaKnown RBP15.76■□□□□ 0.11
LIMS1-201ENST00000332345 NME8Q8N427 588 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 VAV3Q9UKW4 847 aa15.76■□□□□ 0.11
LIMS1-201ENST00000332345 IGSF9BQ9UPX0 1349 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 EML1O00423 815 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 MAGEB2O15479 319 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 OATP04181 439 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 P4HBP07237 508 aaKnown RBP15.75■□□□□ 0.11
LIMS1-201ENST00000332345 TXKP42681 527 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 FXR1P51114 621 aaKnown RBP eCLIP15.75■□□□□ 0.11
LIMS1-201ENST00000332345 PSMC5P62195 406 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 EPHA7Q15375 998 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 XKR3Q5GH77 459 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 TTC38Q5R3I4 469 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 IER5Q5VY09 327 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 RUFY4Q6ZNE9 571 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 TRAPPC12Q8WVT3 735 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 DNAJB3Q8WWF6 145 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 MTMR9Q96QG7 549 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 TTC12Q9H892 705 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-201ENST00000332345 LAMA3Q16787 3333 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 EVPLQ92817 2033 aa15.75■□□□□ 0.11
LIMS1-201ENST00000332345 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-201ENST00000332345 SMIM35A0A1B0GVV1 85 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-201ENST00000332345 KIF28PB7ZC32 967 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 WNT7AO00755 349 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 ZNF862O60290 1169 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 CXCL10P02778 98 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 QARSP47897 775 aaKnown RBP15.74■□□□□ 0.11
LIMS1-201ENST00000332345 PRKCEQ02156 737 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 FAM26DQ5JW98 314 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 NCAPH2Q6IBW4 605 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 TRAF7Q6Q0C0 670 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 HSCBQ8IWL3 235 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 VWCEQ96DN2 955 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 TET1Q8NFU7 2136 aa15.74■□□□□ 0.11
LIMS1-201ENST00000332345 DDX11L8A8MPP1 907 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 ZBBXA8MT70 800 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 ZBTB42B2RXF5 422 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 M0QZ92 97 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 NBNO60934 754 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 CTSHP09668 335 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 TMOD1P28289 359 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 GPNMBQ14956 572 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 UGCGQ16739 394 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 RILPL1Q5EBL4 403 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 RASIP1Q5U651 963 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 GPR153Q6NV75 609 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 CNKSR3Q6P9H4 555 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 BANK1Q8NDB2 785 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 NIFKQ9BYG3 293 aaKnown RBP15.73■□□□□ 0.11
LIMS1-201ENST00000332345 FAM49AQ9H0Q0 323 aaPredicted RBP15.73■□□□□ 0.11
LIMS1-201ENST00000332345 TMEM60Q9H2L4 133 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 SLC4A7Q9Y6M7 1214 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 TANC1Q9C0D5 1861 aa15.73■□□□□ 0.11
LIMS1-201ENST00000332345 EFCAB14O75071 495 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 BAIAP3O94812 1187 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 CHRNA1P02708 482 aa15.72■□□□□ 0.11
LIMS1-201ENST00000332345 TOB1P50616 345 aaPredicted RBP15.72■□□□□ 0.11
LIMS1-201ENST00000332345 MRPS6P82932 125 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms