RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 SPO11Q9Y5K1 396 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 CD2APQ9Y5K6 639 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 A0A087WZG4 1122 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 E7ENQ6 273 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF213O14771 459 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 P4HA2O15460 535 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 GM2AP17900 193 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 IARSP41252 1262 aaKnown RBP12.87□□□□□ -0.35
SHMT2-201ENST00000328923 HAND2P61296 217 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 SLC44A4Q53GD3 710 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 APOA5Q6Q788 366 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.87□□□□□ -0.352e-6■■■■■ 41.4
SHMT2-201ENST00000328923 SUPT20HQ8NEM7 779 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 APPBP2Q92624 585 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 LENG1Q96BZ8 264 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-201ENST00000328923 MS4A14Q96JA4 679 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 TMEM87BQ96K49 555 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 NEUROD6Q96NK8 337 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 HAPLN3Q96S86 360 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 CAPN6Q9Y6Q1 641 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 MYH1P12882 1939 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SPATA31A5Q5VU36 1347 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SPATA31A7Q8IWB4 1347 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 BOLA2-SMG1P6H3BVE0 249 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 ATP9BO43861 1147 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 ATP9AO75110 1047 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CIAO1O76071 339 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 MMEP08473 750 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 PYGMP11217 842 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 BCRP11274 1271 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CD44P16070 742 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 FAM47EQ6ZV65 393 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 RAB11FIP4Q86YS3 637 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SCUBE1Q8IWY4 988 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CCDC65Q8IXS2 484 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 ERMNQ8TAM6 284 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 UTP4Q969X6 686 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 IFT74Q96LB3 600 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 GSDMAQ96QA5 445 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 FOXP1Q9H334 677 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CYP39A1Q9NYL5 469 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 ASAP1Q9ULH1 1129 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 MAGEB3O15480 346 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 NCK2O43639 380 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 LDHAP00338 332 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 HARSP12081 509 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CYP27A1Q02318 531 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 MECOMQ03112 1051 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SULT2A1Q06520 285 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SAFBQ15424 915 aaKnown RBP eCLIP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SH2D4BQ5SQS7 431 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 AGBL2Q5U5Z8 902 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SH3RF1Q7Z6J0 888 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 SGMS1Q86VZ5 419 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 CYP4X1Q8N118 509 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 ATP8B4Q8TF62 1192 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 FERMT2Q96AC1 680 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 PURBQ96QR8 312 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 DDX50Q9BQ39 737 aaKnown RBP12.86□□□□□ -0.35
SHMT2-201ENST00000328923 PFDN4Q9NQP4 134 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 NMRK1Q9NWW6 199 aa12.86□□□□□ -0.35
SHMT2-201ENST00000328923 MYH10P35580 1976 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 HTR3EA5X5Y0 456 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 HGSO14964 777 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MMP1P03956 469 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CHN1P15882 459 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 TOB1P50616 345 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 KRT83P78385 493 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 KRT31Q15323 416 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CLPPQ16740 277 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 SPTY2D1Q68D10 685 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 WDR59Q6PJI9 974 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MYOCDQ8IZQ8 938 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 RETREG2Q8NC44 543 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF333Q96JL9 665 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 PBKQ96KB5 322 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 KRT23Q9C075 422 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CEP126Q9P2H0 1117 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 LRCH1Q9Y2L9 728 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MYH7BA7E2Y1 1941 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 TTC26A0AVF1 554 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MAGEA13PA6NCF6 341 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 ZBTB43O43298 467 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 TJP3O95049 919 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 PAFAH1B1P43034 410 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CD97P48960 835 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 HPCAP84074 193 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 LMBR1LQ6UX01 489 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CCDC125Q86Z20 511 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 RBBP8NLQ8NC74 664 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 DHTKD1Q96HY7 919 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 NUDCD1Q96RS6 583 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MPHOSPH6Q99547 160 aaKnown RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 SIKE1Q9BRV8 207 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 MLXIPQ9HAP2 919 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 TAB2Q9NYJ8 693 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 CTTNBP2NLQ9P2B4 639 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 SUCLA2Q9P2R7 463 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-201ENST00000328923 HEY1Q9Y5J3 304 aa12.85□□□□□ -0.35
SHMT2-201ENST00000328923 COMMD3-BMI1R4GMX3 469 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms