RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MRPL11Q9Y3B7 192 aaKnown RBP15.28■□□□□ 0.04
COL7A1-201ENST00000328333 PCDHB4Q9Y5E5 795 aa15.28■□□□□ 0.04
COL7A1-201ENST00000328333 ASAP2O43150 1006 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 FGGP02679 453 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 HSPD1P10809 573 aaKnown RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 ORC2Q13416 577 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 HIC1Q14526 733 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 NLRP14Q86W24 1093 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 CNBD2Q96M20 576 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 DISC1Q9NRI5 854 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 PYCARDQ9ULZ3 195 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 ENC1O14682 589 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 MEFVO15553 781 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 DLATP10515 647 aaKnown RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 ANXA13P27216 316 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 DDIT3P35638 169 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 RAD23BP54727 409 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 GPATCH4Q5T3I0 446 aaKnown RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 DCLK2Q8N568 766 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 CXorf56Q9H5V9 222 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 CAPRIN1Q14444 709 aaKnown RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 FAM102BQ5T8I3 360 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 WWP1Q9H0M0 922 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 MFAP3LO75121 409 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 DHX34Q14147 1143 aaKnown RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 GJC2Q5T442 439 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 SYDE1Q6ZW31 735 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-201ENST00000328333 TTLL11Q8NHH1 800 aa15.27■□□□□ 0.04
COL7A1-201ENST00000328333 WDR64B1ANS9 1081 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 SCYL2Q6P3W7 929 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 TAF1DQ9H5J8 278 aaPredicted RBP15.27■□□□□ 0.03
COL7A1-201ENST00000328333 YWHAHQ04917 246 aaPredicted RBP15.27■□□□□ 0.03
COL7A1-201ENST00000328333 EFTUD2Q15029 972 aaKnown RBP eCLIP15.27■□□□□ 0.038e-7■■■■■ 35.7
COL7A1-201ENST00000328333 TMEM259Q4ZIN3 620 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 CAPN12Q6ZSI9 719 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 ZNF839A8K0R7 811 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 LPXNO60711 386 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 PLEKHM3Q6ZWE6 761 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 PLD3Q8IV08 490 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 ECT2Q9H8V3 914 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 ARL2BPQ9Y2Y0 163 aa15.27■□□□□ 0.03
COL7A1-201ENST00000328333 RTCBQ9Y3I0 505 aaKnown RBP15.27■□□□□ 0.03
COL7A1-201ENST00000328333 LRRIQ3A6PVS8 624 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CPA1P15085 419 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 HLA-DPA1P20036 260 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 FAM160B1Q5W0V3 765 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 TBC1D9BQ66K14 1250 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CNBD1Q8NA66 436 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 GOLPH3LQ9H4A5 285 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 SLC38A10Q9HBR0 1119 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 PKD2L1Q9P0L9 805 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 MYH1P12882 1939 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 MYH2Q9UKX2 1941 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 MYH4Q9Y623 1939 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 AP3B1O00203 1094 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ZBED1O96006 694 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 FRA10AC1Q70Z53 315 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ZNF532Q9HCE3 1301 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 WDR62O43379 1518 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 H0Y3Z8 333 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 TBC1D4O60343 1298 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 TESK2Q96S53 571 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CDCA7Q9BWT1 371 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CCDC134Q9H6E4 229 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 BLVRAP53004 296 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ARMCX5Q6P1M9 558 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 LUZP2Q86TE4 346 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CFAP36Q96G28 342 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CDC42BPAQ5VT25 1732 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 PDE8AO60658 829 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 HIBADHP31937 336 aaKnown RBP15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ABCE1P61221 599 aaKnown RBP15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ODR4Q5SWX8 454 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 TRAF7Q6Q0C0 670 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 SRLQ86TD4 932 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 PGBD1Q96JS3 809 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 CFLARO15519 480 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ACADSP16219 412 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ELF1P32519 619 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 DEPDC1Q5TB30 811 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 NCAPG2Q86XI2 1143 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ASPRV1Q53RT3 343 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ADAT2Q7Z6V5 191 aaKnown RBP15.26■□□□□ 0.03
COL7A1-201ENST00000328333 PRUNE1Q86TP1 453 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 ATP11CQ8NB49 1132 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 TEKT3Q9BXF9 490 aa15.26■□□□□ 0.03
COL7A1-201ENST00000328333 POLGP54098 1239 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 TRIM69Q86WT6 500 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 FOXP3Q9BZS1 431 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 PSD3Q9NYI0 1048 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 KCNJ14Q9UNX9 436 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 CDC27P30260 824 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 RASSF3Q86WH2 238 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 TRIM63Q969Q1 353 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 MMS19Q96T76 1030 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 HSPA9P38646 679 aaKnown RBP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 DPCR1Q3MIW9 517 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 TTC39CQ8N584 583 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 CDHR1Q96JP9 859 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 LSG1Q9H089 658 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms