RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 HOXC6P09630 235 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 SUPT20HL2P0C7V6 817 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 MUTP22033 750 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 SARSP49591 514 aaKnown RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 ZNF165P49910 485 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 TAPT1Q6NXT6 567 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 C11orf57Q6ZUT1 292 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 MTERF4Q7Z6M4 381 aaKnown RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 LUZP1Q86V48 1076 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 MSL3Q8N5Y2 521 aaKnown RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 BEGAINQ9BUH8 593 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 FLRT1Q9NZU1 646 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 PLXNA1Q9UIW2 1896 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 ADCY5O95622 1261 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 FLT3LGP49771 235 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 CACNB1Q02641 598 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 TMEM63BQ5T3F8 832 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 CCDC62Q6P9F0 684 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 CCDC60Q8IWA6 550 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 GABRQQ9UN88 632 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 NPHP3-ACAD11A0A0J9YXS1 232 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 DKC1O60832 514 aaKnown RBP eCLIP11.15□□□□□ -0.62
HMGB3-201ENST00000325307 PTGS1P23219 599 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 YWHABP31946 246 aaKnown RBP11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SLC12A3P55017 1021 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 PRKCZQ05513 592 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 TMEM132AQ24JP5 1023 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 KMT5BQ4FZB7 885 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 NT5DC1Q5TFE4 455 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 ABHD15Q6UXT9 468 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 KCTD17Q8N5Z5 321 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SYT2Q8N9I0 419 aaPredicted RBP11.15□□□□□ -0.62
HMGB3-201ENST00000325307 TRIML1Q8N9V2 468 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SPATA20Q8TB22 786 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 FAM200AQ8TCP9 573 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 CD99L2Q8TCZ2 262 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SEPT1Q8WYJ6 367 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 USP6NLQ92738 828 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SH2D3AQ9BRG2 576 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 AZI2Q9H6S1 392 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 ZNF302Q9NR11 478 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 GH1P01241 217 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 CYP11B2P19099 503 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 TCF7P36402 384 aaPredicted RBP11.15□□□□□ -0.62
HMGB3-201ENST00000325307 MORC3Q14149 939 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 CCDC144BQ3MJ40 725 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 SMYD4Q8IYR2 804 aaPredicted RBP11.15□□□□□ -0.62
HMGB3-201ENST00000325307 GLG1Q92896 1179 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 CBX8Q9HC52 389 aa11.15□□□□□ -0.62
HMGB3-201ENST00000325307 TMEM150BA6NC51 233 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 BECN2A8MW95 431 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 HSDL1Q3SXM5 330 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 XKR9Q5GH70 373 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 KLHL10Q6JEL2 608 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 C4orf19Q8IY42 314 aa11.15□□□□□ -0.63
HMGB3-201ENST00000325307 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.14□□□□□ -0.63
HMGB3-201ENST00000325307 GPR25O00155 361 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 TBCAO75347 108 aaKnown RBP11.14□□□□□ -0.63
HMGB3-201ENST00000325307 PRKCEQ02156 737 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 FAM160B1Q5W0V3 765 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 OLFML2BQ68BL8 750 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 RUSC1Q9BVN2 902 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 POLD4Q9HCU8 107 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 SEPT9Q9UHD8 586 aaPredicted RBP11.14□□□□□ -0.63
HMGB3-201ENST00000325307 DACH1Q9UI36 760 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 PCNTO95613 3336 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 DOCK5Q9H7D0 1870 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 CAVIN2O95810 425 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 TNFAIP2Q03169 654 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 LAMC2Q13753 1193 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 PLA2G4FQ68DD2 849 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 OTUD6AQ7L8S5 288 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 CCDC65Q8IXS2 484 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 MLKLQ8NB16 471 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 KATNBL1Q9H079 304 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 PANK4Q9NVE7 773 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 MAPK8IP1Q9UQF2 711 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 ZKSCAN5Q9Y2L8 839 aa11.14□□□□□ -0.63
HMGB3-201ENST00000325307 GSTTP1A0A1W2PQM5 241 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 BMP6P22004 513 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 HOXD10P28358 340 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 STAT5BP51692 787 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 MFSD14CQ5VZR4 134 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 IQSEC1Q6DN90 963 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 PADI6Q6TGC4 694 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 UNC13DQ70J99 1090 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 MAEAQ7L5Y9 396 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 GPR20Q99678 358 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 TSKSQ9UJT2 592 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 LRRC37A2A6NM11 1700 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 KLRC4O43908 158 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF862O60290 1169 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 USO1O60763 962 aaKnown RBP11.13□□□□□ -0.63
HMGB3-201ENST00000325307 LYPLA2O95372 231 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 HSPA6P17066 643 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 SMPD1P17405 629 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 MARK3P27448 753 aa11.13□□□□□ -0.63
HMGB3-201ENST00000325307 NPEPPSP55786 919 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms