RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 HIBCHQ6NVY1 386 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 BBOF1Q8ND07 529 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 TMEM206Q9H813 350 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 PPEF1O14829 653 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 RASSF2P50749 326 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 SGO2Q562F6 1265 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 OTUD6AQ7L8S5 288 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 DPH6Q7L8W6 267 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 NLRX1Q86UT6 975 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 PSMD1Q99460 953 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 MAK16Q9BXY0 300 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 SLITRK6Q9H5Y7 841 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 PLEKHG2Q9H7P9 1386 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 SART1O43290 800 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 KCNQ2O43526 872 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 MAN1A1P33908 653 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 CARSP49589 748 aaKnown RBP15.97■□□□□ 0.15
TCOF1-201ENST00000323668 PPP2R2AP63151 447 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 DLGAP5Q15398 846 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 STMN2Q93045 179 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 COA1Q9GZY4 146 aa15.97■□□□□ 0.15
TCOF1-201ENST00000323668 MIF4GDA9UHW6 222 aaKnown RBP15.96■□□□□ 0.15
TCOF1-201ENST00000323668 H0YIN7 160 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 E2F5Q15329 346 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 LRP10Q7Z4F1 713 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 FRMD5Q7Z6J6 570 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 P3H4Q92791 437 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 ACCSQ96QU6 501 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 TACO1Q9BSH4 297 aaKnown RBP15.96■□□□□ 0.15
TCOF1-201ENST00000323668 USP21Q9UK80 565 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 NOC2LQ9Y3T9 749 aaKnown RBP15.96■□□□□ 0.15
TCOF1-201ENST00000323668 CD2APQ9Y5K6 639 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 PODXLO00592 558 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 TFRCP02786 760 aaKnown RBP15.96■□□□□ 0.15
TCOF1-201ENST00000323668 MXI1P50539 228 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 USP11P51784 963 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 ZNF131P52739 623 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 CDK17Q00537 523 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 TBC1D31Q96DN5 1066 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 AMACRQ9UHK6 382 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 KCNG1Q9UIX4 513 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 CAPN6Q9Y6Q1 641 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 MAP2K7O14733 419 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 NEBLO76041 1014 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 PRLRP16471 622 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 NSFP46459 744 aaKnown RBP15.96■□□□□ 0.15
TCOF1-201ENST00000323668 ADCY2Q08462 1091 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 LRRC31Q6UY01 552 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 LMNTD2Q8IXW0 634 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 MAD2L2Q9UI95 211 aa15.96■□□□□ 0.15
TCOF1-201ENST00000323668 CHUKO15111 745 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 HIP1RO75146 1068 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 AKR1B1P15121 316 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 CORO7P57737 925 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 PTK2Q05397 1052 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 TRPC3Q13507 836 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 QRICH1Q2TAL8 776 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.96■□□□□ 0.14
TCOF1-201ENST00000323668 MTMR4Q9NYA4 1195 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 DMGDHQ9UI17 866 aaKnown RBP15.96■□□□□ 0.14
TCOF1-201ENST00000323668 FBXL5Q9UKA1 691 aa15.96■□□□□ 0.14
TCOF1-201ENST00000323668 MEFVO15553 781 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-201ENST00000323668 ALAS1P13196 640 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 MAPK4P31152 587 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 PDE6BP35913 854 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 STAT3P40763 770 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 ZIM3Q96PE6 472 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 NDC80O14777 642 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 DAPK3O43293 454 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 KLRC1P26715 233 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 PMS1P54277 932 aaKnown RBP15.95■□□□□ 0.14
TCOF1-201ENST00000323668 ARHGEF2Q92974 986 aaKnown RBP15.95■□□□□ 0.14
TCOF1-201ENST00000323668 ODF2LQ9ULJ1 636 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 MDH1P40925 334 aaKnown RBP15.95■□□□□ 0.14
TCOF1-201ENST00000323668 SNX1Q13596 522 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 FAM205AQ6ZU69 1335 aa15.95■□□□□ 0.14
TCOF1-201ENST00000323668 FXR2P51116 673 aaKnown RBP eCLIP15.94■□□□□ 0.143e-7■■■■□ 22.5
TCOF1-201ENST00000323668 SNAP25P60880 206 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 NEDD9Q14511 834 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 NAB2Q15742 525 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 FAM182BQ5T319 152 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 DCAF4Q8WV16 495 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 POMGNT1Q8WZA1 660 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 CSRNP1Q96S65 589 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 EPN3Q9H201 632 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 ZNF148Q9UQR1 794 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 TESPA1A2RU30 521 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 MMEP08473 750 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 BPIFB4P59827 614 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 DRAP1Q14919 205 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 GLYCTKQ8IVS8 523 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 MCUR1Q96AQ8 359 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 KLHL29Q96CT2 875 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 SYNGAP1Q96PV0 1343 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 ESYT2A0FGR8 921 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 PALM3A6NDB9 673 aaPredicted RBP15.94■□□□□ 0.14
TCOF1-201ENST00000323668 PDXKO00764 312 aa15.94■□□□□ 0.14
TCOF1-201ENST00000323668 ZBED4O75132 1171 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms