RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 LRP2BPQ9P2M1 347 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RPS6KA3P51812 740 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 MTTPP55157 894 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RPL10AP62906 217 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 DMTNQ08495 405 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ICE2Q659A1 982 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 SULF1Q8IWU6 871 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM42Q8IWZ5 723 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 DDHD1Q8NEL9 900 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 C6orf62Q9GZU0 229 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 METTL8Q9H825 291 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RMND1Q9NWS8 449 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RGL1Q9NZL6 768 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 KLHL8Q9P2G9 620 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 BHMG1C9JSJ3 638 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 M0R2C6 588 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TLR3O15455 904 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PRODHO43272 600 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CYTH3O43739 400 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 STRNO43815 780 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RANBP6O60518 1105 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TSPAN1O60635 241 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CBFA2T3O75081 653 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ARID5BQ14865 1188 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 IMPG1Q17R60 797 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 RNF19BQ6ZMZ0 732 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TRIM58Q8NG06 486 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 SARS2Q9NP81 518 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PNO1Q9NRX1 252 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 MYO1AQ9UBC5 1043 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TK2O00142 265 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 XPO1O14980 1071 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 CLK1P49759 484 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 NCBP1Q09161 790 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 PTPROQ16827 1216 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 UGP2Q16851 508 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ARMC6Q6NXE6 501 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 XXYLT1Q8NBI6 393 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 C19orf18Q8NEA5 215 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 TTC17Q96AE7 1141 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ERO1AQ96HE7 468 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 SRPK1Q96SB4 655 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 DDX19AQ9NUU7 478 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 ACAD8Q9UKU7 415 aa8.17□□□□□ -1.1
LIMCH1-201ENST00000313860 M0QZ92 97 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 IDH1O75874 414 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ERFP50548 548 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CALML6Q8TD86 181 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ZKSCAN3Q9BRR0 538 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 BEGAINQ9BUH8 593 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 TEX13AQ9BXU3 409 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 RIC8AQ9NPQ8 531 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CIDEBQ9UHD4 219 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ZNF112Q9UJU3 913 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 hCG_1642624A0A1W2PR95 340 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 RNF103O00237 685 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CLCN1P35523 988 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 SLC16A1P53985 500 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 BIRC3Q13489 604 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 DCTN2Q13561 401 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 RNF151Q2KHN1 245 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 USP39Q53GS9 565 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 TTC22Q5TAA0 569 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 METTL6Q8TCB7 284 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 NCOA2Q15596 1464 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CHP2O43745 196 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CLUP10909 449 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 HDGFP51858 240 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CACNA2D1P54289 1103 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ASIC1P78348 528 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 FAM83BQ5T0W9 1011 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 LIN9Q5TKA1 542 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 C1orf146Q5VVC0 180 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 DHX38Q92620 1227 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 EXO5Q9H790 373 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 RNF14Q9UBS8 474 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ERICH3Q5RHP9 1530 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 FHAD1B1AJZ9 1412 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 SH3D21A4FU49 640 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CFAP69A5D8W1 941 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 KCNQ3O43525 872 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CALUO43852 315 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 IFNB1P01574 187 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ADCY8P40145 1251 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 FBXO42Q6P3S6 717 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CRTC1Q6UUV9 634 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 CYGBQ8WWM9 190 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 SLC9A6Q92581 669 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 BHMT2Q9H2M3 363 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 DPH5Q9H2P9 285 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 MCUBQ9NWR8 336 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 SMG6Q86US8 1419 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 LOC102724200A0A096LPH7 203 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ANKRD65E5RJM6 399 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 DDX6P26196 483 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 SOX6P35712 828 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 ATXN3P54252 364 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 PRAMEP78395 509 aa8.16□□□□□ -1.1
LIMCH1-201ENST00000313860 DGCR6Q14129 220 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms