RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CREG2Q8IUH2 290 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 EHD2Q9NZN4 543 aa22.07■■□□□ 1.12
VPS53-201ENST00000291074 GYS2P54840 703 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 WRAP73Q9P2S5 460 aaPredicted RBP22.06■■□□□ 1.12
VPS53-201ENST00000291074 PDXKO00764 312 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 NR3C1P04150 777 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 ARP10275 920 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 NMT1P30419 496 aaKnown RBP22.06■■□□□ 1.12
VPS53-201ENST00000291074 CHURC1Q8WUH1 139 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 SYN2Q92777 582 aaPredicted RBP22.06■■□□□ 1.12
VPS53-201ENST00000291074 SLC5A5Q92911 643 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 ALS2CR12Q96Q35 445 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 CAMKK2Q96RR4 588 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 HINFPQ9BQA5 517 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 STK24Q9Y6E0 443 aa22.06■■□□□ 1.12
VPS53-201ENST00000291074 RBAK-RBAKDNI3L0D1 243 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 CALUO43852 315 aaPredicted RBP22.05■■□□□ 1.12
VPS53-201ENST00000291074 CASP8Q14790 479 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 FRMD5Q7Z6J6 570 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 KSR1Q8IVT5 923 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 NUCKS1Q9H1E3 243 aaKnown RBP22.05■■□□□ 1.12
VPS53-201ENST00000291074 TYW1Q9NV66 732 aaKnown RBP22.05■■□□□ 1.12
VPS53-201ENST00000291074 A0A087X0T9 212 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 GAS7O60861 476 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 FAM228BP0C875 321 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 NAP1L1P55209 391 aaKnown RBP22.05■■□□□ 1.12
VPS53-201ENST00000291074 BMT2Q1RMZ1 405 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 ZC2HC1CQ53FD0 456 aaPredicted RBP22.05■■□□□ 1.12
VPS53-201ENST00000291074 TCERG1LQ5VWI1 586 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 DPY19L2P1Q6NXN4 242 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 ARHGAP27Q6ZUM4 889 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 OSBPL9Q96SU4 736 aa22.05■■□□□ 1.12
VPS53-201ENST00000291074 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS53-201ENST00000291074 AFPP02771 609 aaKnown RBP22.04■■□□□ 1.12
VPS53-201ENST00000291074 CEP55Q53EZ4 464 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 LDHDQ86WU2 507 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 GSPT2Q8IYD1 628 aaKnown RBP22.04■■□□□ 1.12
VPS53-201ENST00000291074 RTKN2Q8IZC4 609 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 GBP3Q9H0R5 595 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 ZMYM2Q9UBW7 1377 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 MYH11P35749 1972 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 SHTN1A0MZ66 631 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 N4BP1O75113 896 aaKnown RBP22.04■■□□□ 1.12
VPS53-201ENST00000291074 FAM13AO94988 1023 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 DPEP1P16444 411 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 CAP2P40123 477 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 PRELPP51888 382 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 KLHL30Q0D2K2 578 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 PPP2R5CQ13362 524 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 ASIC2Q16515 512 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 MYCT1Q8N699 235 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 RPGRIP1Q96KN7 1286 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 PSMD1Q99460 953 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 PACSIN1Q9BY11 444 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 TUFT1Q9NNX1 390 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 ADAMTS1Q9UHI8 967 aa22.04■■□□□ 1.12
VPS53-201ENST00000291074 MRPL11Q9Y3B7 192 aaKnown RBP22.04■■□□□ 1.12
VPS53-201ENST00000291074 LRRIQ3A6PVS8 624 aaPredicted RBP22.03■■□□□ 1.12
VPS53-201ENST00000291074 TGFB1I1O43294 461 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 XRCC5P13010 732 aaKnown RBP22.03■■□□□ 1.12
VPS53-201ENST00000291074 C1orf186Q6ZWK4 172 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 AGBL1Q96MI9 1066 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 ZNF577Q9BSK1 485 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 UNC45AQ9H3U1 944 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 PKD2L1Q9P0L9 805 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 PCDHB13Q9Y5F0 798 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 ERICH4A6NGS2 130 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 MRPS25P82663 173 aaKnown RBP22.03■■□□□ 1.12
VPS53-201ENST00000291074 NBPF9Q3BBW0 867 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 NOX5Q96PH1 765 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 AIPL1Q9NZN9 384 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 DDX39AO00148 427 aaKnown RBP22.03■■□□□ 1.12
VPS53-201ENST00000291074 KCNA3P22001 575 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 PON1P27169 355 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 TRAF1Q13077 416 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 SLC18A3Q16572 532 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 KLHDC7AQ5VTJ3 777 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 GDAP1L1Q96MZ0 367 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 TLR10Q9BXR5 811 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 OLFML3Q9NRN5 406 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 AJAP1Q9UKB5 411 aaPredicted RBP22.03■■□□□ 1.12
VPS53-201ENST00000291074 HYOU1Q9Y4L1 999 aa22.03■■□□□ 1.12
VPS53-201ENST00000291074 TUBBP07437 444 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 MYBL2P10244 700 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 UCHL3P15374 230 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 KLRC1P26715 233 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 COG2Q14746 738 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 EXOC3L4Q17RC7 722 aa22.02■■□□□ 1.12
VPS53-201ENST00000291074 INPP5BP32019 993 aa22.02■■□□□ 1.11
VPS53-201ENST00000291074 MATR3P43243 847 aaKnown RBP eCLIP22.02■■□□□ 1.119e-10■■□□□ 13.9
VPS53-201ENST00000291074 DNA2P51530 1060 aa22.02■■□□□ 1.11
VPS53-201ENST00000291074 DGKZQ13574 1117 aa22.02■■□□□ 1.11
VPS53-201ENST00000291074 DNAAF5Q86Y56 855 aa22.02■■□□□ 1.11
VPS53-201ENST00000291074 SLC35C1Q96A29 364 aa22.02■■□□□ 1.11
VPS53-201ENST00000291074 EPB41P11171 864 aaKnown RBP22.01■■□□□ 1.11
VPS53-201ENST00000291074 GAP43P17677 238 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 EPHA7Q15375 998 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 GJB7Q6PEY0 223 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 BANK1Q8NDB2 785 aa22.01■■□□□ 1.11
VPS53-201ENST00000291074 PTK2Q05397 1052 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms