RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 FARP2O94887 1054 aaPredicted RBP15.65■□□□□ 0.1
SS18-201ENST00000269137 SUPT20HL2P0C7V6 817 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 CDK11BP21127 795 aaKnown RBP15.65■□□□□ 0.1
SS18-201ENST00000269137 TM4SF4P48230 202 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 ZNF131P52739 623 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 CACNB1Q02641 598 aaPredicted RBP15.65■□□□□ 0.1
SS18-201ENST00000269137 PADI6Q6TGC4 694 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 C17orf99Q6UX52 265 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 METTL7BQ6UX53 244 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 MAMDC4Q6UXC1 1216 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 MYOCDQ8IZQ8 938 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 NOC3LQ8WTT2 800 aaKnown RBP15.65■□□□□ 0.1
SS18-201ENST00000269137 XPO4Q9C0E2 1151 aaKnown RBP15.65■□□□□ 0.1
SS18-201ENST00000269137 GABBR1Q9UBS5 961 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 CPA4Q9UI42 421 aa15.65■□□□□ 0.1
SS18-201ENST00000269137 ZNF236Q9UL36 1845 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 KIF20AO95235 890 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 SERPINC1P01008 464 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 PMS1P54277 932 aaKnown RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 SWSAP1Q6NVH7 229 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 CCDC62Q6P9F0 684 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 ARMCX2Q7L311 632 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 EEPD1Q7L9B9 569 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 TRIM44Q96DX7 344 aaPredicted RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 SEMA6BQ9H3T3 888 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 OLFML3Q9NRN5 406 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 SEL1LQ9UBV2 794 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 MYH9P35579 1960 aaKnown RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 IGSF9BQ9UPX0 1349 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 IGKV6D-21A0A0A0MT36 114 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 TRIM49BA6NDI0 452 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 RSPH10B2B2RC85 870 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 ZNF862O60290 1169 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 STBD1O95210 358 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 RSPH10BP0C881 870 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 UBASH3AP57075 661 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 SPAG1Q07617 926 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 ANKRD40Q6AI12 368 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 OTUD6AQ7L8S5 288 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 DPP9Q86TI2 863 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 SFR1Q86XK3 245 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 CCDC60Q8IWA6 550 aaPredicted RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 DUSP9Q99956 384 aaKnown RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 TIPINQ9BVW5 301 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 ZHX3Q9H4I2 956 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 THAP9Q9H5L6 903 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 PARVGQ9HBI0 331 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 ZFYVE28Q9HCC9 887 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 VTA1Q9NP79 307 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 TELO2Q9Y4R8 837 aa15.64■□□□□ 0.09
SS18-201ENST00000269137 MAFBQ9Y5Q3 323 aaPredicted RBP15.64■□□□□ 0.09
SS18-201ENST00000269137 LRRC10BA6NIK2 292 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 FAM13AO94988 1023 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 GGPS1O95749 300 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 LRRC63Q05C16 580 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 LRRC41Q15345 812 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 CELF3Q5SZQ8 465 aaKnown RBP15.63■□□□□ 0.09
SS18-201ENST00000269137 ANO5Q75V66 913 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 EPM2AIP1Q7L775 607 aaPredicted RBP15.63■□□□□ 0.09
SS18-201ENST00000269137 FBXO16Q8IX29 292 aaPredicted RBP15.63■□□□□ 0.09
SS18-201ENST00000269137 GLIS3Q8NEA6 775 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 SCFD2Q8WU76 684 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 TRIM47Q96LD4 638 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 SLC5A4Q9NY91 659 aa15.63■□□□□ 0.09
SS18-201ENST00000269137 GSTTP1A0A1W2PQM5 241 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 RBM47A0AV96 593 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 GOLGA6L6A8MZA4 724 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 ARIH2O95376 493 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 PTMAP06454 111 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 SP4Q02446 784 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 TTLL4Q14679 1199 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 LY6KQ17RY6 165 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 HSP90AA4PQ58FG1 418 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 MORN1Q5T089 497 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 APTXQ7Z2E3 356 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 IRF2BP1Q8IU81 584 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 MSL3Q8N5Y2 521 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 CSGALNACT2Q8N6G5 542 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 SCFD1Q8WVM8 642 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 CCDC43Q96MW1 224 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 CTAGE1Q96RT6 745 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 FGFBP2Q9BYJ0 223 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 MLXIPQ9HAP2 919 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 TBC1D7Q9P0N9 293 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 LIMA1Q9UHB6 759 aaKnown RBP15.62■□□□□ 0.09
SS18-201ENST00000269137 DOCK3Q8IZD9 2030 aa15.62■□□□□ 0.09
SS18-201ENST00000269137 BACH1O14867 736 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 TPM3P06753 285 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 MAPK7Q13164 816 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 BMT2Q1RMZ1 405 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 XKR9Q5GH70 373 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 XKR3Q5GH77 459 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 UTP14CQ5TAP6 766 aaKnown RBP15.61■□□□□ 0.09
SS18-201ENST00000269137 DRC7Q8IY82 874 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 DAW1Q8N136 415 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 SEPT1Q8WYJ6 367 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 MAML3Q96JK9 1138 aa15.61■□□□□ 0.09
SS18-201ENST00000269137 NAP1L5Q96NT1 182 aaPredicted RBP15.61■□□□□ 0.09
SS18-201ENST00000269137 SRRTQ9BXP5 876 aaKnown RBP15.61■□□□□ 0.09
SS18-201ENST00000269137 ZNF302Q9NR11 478 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms