RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 POU5F1BQ06416 359 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 MTERF2Q49AM1 385 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 TTC8Q8TAM2 541 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 RUBCNLQ9H714 662 aa12.2□□□□□ -0.46
PTPN4-201ENST00000263708 WDR47O94967 919 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 STAT2P52630 851 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 SLFN13Q68D06 897 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 USP6NLQ92738 828 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 ATP6V0A4Q9HBG4 840 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 DOLKQ9UPQ8 538 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 CTSWP56202 376 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 EFTUD2Q15029 972 aaKnown RBP eCLIP12.19□□□□□ -0.463e-8■■■■□ 19.4
PTPN4-201ENST00000263708 DDX53Q86TM3 631 aaKnown RBP12.19□□□□□ -0.46
PTPN4-201ENST00000263708 RAD18Q9NS91 495 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 MED21Q13503 144 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 MMS22LQ6ZRQ5 1243 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 USP21Q9UK80 565 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 MAGI1Q96QZ7 1491 aaPredicted RBP12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TRPM2O94759 1503 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 PPP6R3Q5H9R7 873 aaPredicted RBP12.19□□□□□ -0.46
PTPN4-201ENST00000263708 FAM49AQ9H0Q0 323 aaPredicted RBP12.19□□□□□ -0.46
PTPN4-201ENST00000263708 PCDHA5Q9Y5H7 936 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 ZMYM6O95789 1325 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TMPRSS15P98073 1019 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 GCKRQ14397 625 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 ENAHQ8N8S7 591 aaPredicted RBP12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TOPBP1Q92547 1522 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 KDM1AO60341 852 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 C16orf72Q14CZ0 275 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 KCTD17Q8N5Z5 321 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 URGCPQ8TCY9 931 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TTC17Q96AE7 1141 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 ZFYVE1Q9HBF4 777 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TMEM161AQ9NX61 479 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 TAS2R42Q7RTR8 314 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 OR6B3Q8NGW1 331 aa12.19□□□□□ -0.46
PTPN4-201ENST00000263708 MEIS1O00470 390 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SCG2P13521 617 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 CENPUQ71F23 418 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 BZW1Q7L1Q6 419 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 OPTNQ96CV9 577 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 FBXO2Q9UK22 296 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SF3B3Q15393 1217 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 FAM26FQ5R3K3 315 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 IFNLR1Q8IU57 520 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 FAM133AQ8N9E0 248 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 EPN1Q9Y6I3 576 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 FMNL1O95466 1100 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 APOA4P06727 396 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 PPP1R14AQ96A00 147 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SMAD5Q99717 465 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 PPARGC1AQ9UBK2 798 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 ATP11BQ9Y2G3 1177 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SOS2Q07890 1332 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 CEP78Q5JTW2 689 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 PKN3Q6P5Z2 889 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 DDIASQ8IXT1 998 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 KBTBD3Q8NAB2 608 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 DHX9Q08211 1270 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 PTGDRQ13258 359 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 CAB39Q9Y376 341 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 GOLGA8MH3BSY2 632 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 DCTN3O75935 186 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 COPS2P61201 443 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 CACNB1Q02641 598 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 FSCBQ5H9T9 825 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 TSPYL6Q8N831 410 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 KIAA1468Q9P260 1216 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 LRRC53A6NM62 1247 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 PGBD3Q8N328 593 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SMAD1Q15797 465 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 ZNF280CQ8ND82 737 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 SCG3Q8WXD2 468 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 APOBEC2Q9Y235 224 aaKnown RBP12.18□□□□□ -0.46
PTPN4-201ENST00000263708 MAP3K15Q6ZN16 1313 aa12.18□□□□□ -0.46
PTPN4-201ENST00000263708 RNF103-CHMP3A0A140T963 221 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 PDHA1P08559 390 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 RFWD2Q8NHY2 731 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 TSC22D3Q99576 134 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 A1BGP04217 495 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 GYG1P46976 350 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 MDM2Q00987 491 aaPredicted RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 FAM81BQ96LP2 452 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 USE1Q9NZ43 259 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 hCG_2014768A0A024R1R8 64 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 PGRMC1O00264 195 aaKnown RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 C1orf146Q5VVC0 180 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 SP110Q9HB58 689 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 GYG2O15488 501 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 DIAPH2O60879 1101 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 GSPT1P15170 499 aaKnown RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 APBA1Q02410 837 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 PDCLQ13371 301 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 C6orf118Q5T5N4 469 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 VMP1Q96GC9 406 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 DMAP1Q9NPF5 467 aaPredicted RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 DONSONQ9NYP3 566 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 GAP43P17677 238 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 CA4P22748 312 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms