RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ALS2CLQ60I27 953 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 NLGN1Q8N2Q7 840 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 GMCL1Q96IK5 515 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 DBNDD1Q9H9R9 158 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 FAM198AQ9UFP1 575 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 NRXN2Q9P2S2 1712 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 UCHL3P15374 230 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 RPL13P26373 211 aaKnown RBP18■□□□□ 0.47
HOXD3-201ENST00000249440 CIITAP33076 1130 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 HDLBPQ00341 1268 aaKnown RBP18■□□□□ 0.47
HOXD3-201ENST00000249440 EXOC3L4Q17RC7 722 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 IRF2BP2Q7Z5L9 587 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 KCTD17Q8N5Z5 321 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 METTL14Q9HCE5 456 aaKnown RBP18■□□□□ 0.47
HOXD3-201ENST00000249440 GOLGA8KD6RF30 607 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 NPM3O75607 178 aaKnown RBP18■□□□□ 0.47
HOXD3-201ENST00000249440 SLC9A1P19634 815 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 MMP14P50281 582 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 PTK2Q05397 1052 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 PPFIA1Q13136 1202 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 NNTQ13423 1086 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 ABCB5Q2M3G0 1257 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 SYDE2Q5VT97 1194 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 SRLQ86TD4 932 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 RUFY1Q96T51 708 aa18■□□□□ 0.47
HOXD3-201ENST00000249440 TYW1Q9NV66 732 aaKnown RBP18■□□□□ 0.47
HOXD3-201ENST00000249440 ZBTB7AO95365 584 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 ACTN1P12814 892 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 SNAP25P60880 206 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 FKBP1AP62942 108 aaKnown RBP17.99■□□□□ 0.47
HOXD3-201ENST00000249440 R3HDM1Q15032 1099 aaKnown RBP17.99■□□□□ 0.47
HOXD3-201ENST00000249440 BMT2Q1RMZ1 405 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 STRIP1Q5VSL9 837 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 SH3BP5LQ7L8J4 393 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 MASTLQ96GX5 879 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 SH3GL2Q99962 352 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 PACSIN1Q9BY11 444 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 GDF3Q9NR23 364 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 KCNQ5Q9NR82 932 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 MSH4O15457 936 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 NDUFB10O96000 172 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 MYBP10242 640 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 PON1P27169 355 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 HOXD13P35453 343 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 IFI16Q16666 785 aaKnown RBP17.99■□□□□ 0.47
HOXD3-201ENST00000249440 POLR3CQ9BUI4 534 aaPredicted RBP17.99■□□□□ 0.47
HOXD3-201ENST00000249440 BHMT2Q9H2M3 363 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 PCDHAC2Q9Y5I4 1007 aa17.99■□□□□ 0.47
HOXD3-201ENST00000249440 SLC16A3O15427 465 aaKnown RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 HSF2BPO75031 334 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 TBCAO75347 108 aaKnown RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 AKAP3O75969 853 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 ZNF76P36508 570 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 DNA2P51530 1060 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 DCAF17Q5H9S7 520 aaPredicted RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 DPY19L2P1Q6NXN4 242 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 TAF4BQ92750 862 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 FBXL5Q9UKA1 691 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 RRP15Q9Y3B9 282 aaKnown RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 MYO1CO00159 1063 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 CES2O00748 559 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 SHOX2O60902 331 aaPredicted RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 HEXIM1O94992 359 aaKnown RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 GDF11O95390 407 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 NR3C1P04150 777 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 GLI1P08151 1106 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 EPB41P11171 864 aaKnown RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 BMP3P12645 472 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 CYP4A11Q02928 519 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 ZNF571Q7Z3V5 609 aaPredicted RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 INPP4AQ96PE3 977 aaPredicted RBP17.98■□□□□ 0.47
HOXD3-201ENST00000249440 VAV3Q9UKW4 847 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 RABGAP1Q9Y3P9 1069 aa17.98■□□□□ 0.47
HOXD3-201ENST00000249440 PPFIA4O75335 1185 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 GCNT3O95395 438 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 EYA4O95677 639 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 CYP3A4P08684 503 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 ANXA13P27216 316 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 PRKCIP41743 596 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 PAK2Q13177 524 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 TCERG1LQ5VWI1 586 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 GBP6Q6ZN66 633 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 EIF2AK1Q9BQI3 630 aaKnown RBP17.97■□□□□ 0.47
HOXD3-201ENST00000249440 EPB41L5Q9HCM4 733 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 PACSIN2Q9UNF0 486 aaPredicted RBP17.97■□□□□ 0.47
HOXD3-201ENST00000249440 COL11A2P13942 1736 aaPredicted RBP17.97■□□□□ 0.47
HOXD3-201ENST00000249440 FLOT1O75955 427 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 CLSTN1O94985 981 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 GUCY2DQ02846 1103 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 EPHA7Q15375 998 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 RPS6KA1Q15418 735 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.97■□□□□ 0.47
HOXD3-201ENST00000249440 VPS36Q86VN1 386 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 TSEN2Q8NCE0 465 aaKnown RBP17.97■□□□□ 0.47
HOXD3-201ENST00000249440 OLFML3Q9NRN5 406 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 NAGPAQ9UK23 515 aa17.97■□□□□ 0.47
HOXD3-201ENST00000249440 ASTN1O14525 1302 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 RSPH10B2B2RC85 870 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 RSPH10BP0C881 870 aa17.96■□□□□ 0.47
HOXD3-201ENST00000249440 GAP43P17677 238 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms