RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 RAD17O75943 681 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 ORC2Q13416 577 aaPredicted RBP14.59□□□□□ -0.07
SF3A1-201ENST00000215793 SAMD9Q5K651 1589 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 ZBTB33Q86T24 672 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 FBXO41Q8TF61 875 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 DONSONQ9NYP3 566 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 LCMT1Q9UIC8 334 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 CEP170Q5SW79 1584 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 ROBO2Q9HCK4 1378 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 PVALEFA0A1B0GWK0 134 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 CTTNQ14247 550 aaKnown RBP14.59□□□□□ -0.07
SF3A1-201ENST00000215793 KIAA1841Q6NSI8 718 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 RNF139Q8WU17 664 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 HEXIM2Q96MH2 286 aaKnown RBP14.59□□□□□ -0.07
SF3A1-201ENST00000215793 FAM8A1Q9UBU6 413 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 TBK1Q9UHD2 729 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 FAF1Q9UNN5 650 aaPredicted RBP14.59□□□□□ -0.07
SF3A1-201ENST00000215793 LGALS16A8MUM7 142 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 SPOPLQ6IQ16 392 aa14.59□□□□□ -0.07
SF3A1-201ENST00000215793 PFKFB3Q16875 520 aaPredicted RBP14.58□□□□□ -0.07
SF3A1-201ENST00000215793 ATG16L1Q676U5 607 aa14.58□□□□□ -0.07
SF3A1-201ENST00000215793 RTKN2Q8IZC4 609 aa14.58□□□□□ -0.07
SF3A1-201ENST00000215793 CEP72Q9P209 647 aa14.58□□□□□ -0.07
SF3A1-201ENST00000215793 MBD5Q9P267 1494 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 ANO9A1A5B4 782 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 TJP3O95049 919 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 FGGP02679 453 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 VPS39Q96JC1 886 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 TSPYL2Q9H2G4 693 aaPredicted RBP14.58□□□□□ -0.08
SF3A1-201ENST00000215793 ORC6Q9Y5N6 252 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 SYNGAP1Q96PV0 1343 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 ZBTB5O15062 677 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 KRT37O76014 449 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 HOXA13P31271 388 aaPredicted RBP14.58□□□□□ -0.08
SF3A1-201ENST00000215793 IREB2P48200 963 aaKnown RBP14.58□□□□□ -0.08
SF3A1-201ENST00000215793 PEX3P56589 373 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 ESRRGP62508 458 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 ZNF667Q5HYK9 610 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 SRRM1Q8IYB3 904 aaKnown RBP14.58□□□□□ -0.08
SF3A1-201ENST00000215793 GDAQ9Y2T3 454 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 F8W8V4 182 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 GNGT2O14610 69 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 TOM1L1O75674 476 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 CASP2P42575 452 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 TBC1D9BQ66K14 1250 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 CIAPIN1Q6FI81 312 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 RNF207Q6ZRF8 634 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 RYBPQ8N488 228 aaPredicted RBP14.58□□□□□ -0.08
SF3A1-201ENST00000215793 NCAPD2Q15021 1401 aa14.58□□□□□ -0.08
SF3A1-201ENST00000215793 OSTNP61366 133 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 DHX38Q92620 1227 aaKnown RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 RBM41Q96IZ5 413 aaKnown RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 FAM20AQ96MK3 541 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 AP1M1Q9BXS5 423 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 TFDP2Q14188 446 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 RSBN1LQ6PCB5 846 aaPredicted RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 TTC13Q8NBP0 860 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 TMEM35BQ8NCS4 154 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 FAM167AQ96KS9 214 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 ABCB6Q9NP58 842 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 DNAJC12Q9UKB3 198 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 ARHGAP31Q2M1Z3 1444 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 PHEXP78562 749 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 TRIP13Q15645 432 aaPredicted RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 Q3C1V9 767 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 PPP1R18Q6NYC8 613 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 XXYLT1Q8NBI6 393 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 CCDC124Q96CT7 223 aaKnown RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 PRR36Q9H6K5 1346 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 ZRANB2O95218 330 aaKnown RBP eCLIP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 SRGAP2CP0DJJ0 459 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 MX2P20592 715 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 SEMA3FQ13275 785 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 TOB2Q14106 344 aaPredicted RBP14.57□□□□□ -0.08
SF3A1-201ENST00000215793 SERPINI1Q99574 410 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 ADAM22Q9P0K1 906 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 RFX7Q2KHR2 1363 aa14.57□□□□□ -0.08
SF3A1-201ENST00000215793 GOLGA8IPA6NC78 632 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 GOLGA8JA6NMD2 632 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 EEPD1Q7L9B9 569 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 FGFR1OP2Q9NVK5 253 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 FBXO40Q9UH90 709 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 WDR64B1ANS9 1081 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 SKIP12755 728 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 KLC3Q6P597 504 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 TTC25Q96NG3 672 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 BPIFA3Q9BQP9 254 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 TBC1D22BQ9NU19 505 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 CFAP74Q9C0B2 1584 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PALLDQ8WX93 1383 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 CHEK2O96017 543 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 GH2P01242 217 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 ESRRAP11474 423 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PSMA2P25787 234 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 ANXA13P27216 316 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 PPARGP37231 505 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-201ENST00000215793 MIGA2Q7L4E1 593 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 CHMP6Q96FZ7 201 aa14.56□□□□□ -0.08
SF3A1-201ENST00000215793 NLRP4Q96MN2 994 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms