RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	TAF14	P35189	244 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	OCA5	P38738	679 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	FMP52	P40008	231 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	TPA1	P40032	644 aa	Known RBP	10.06	□□□□□ -0.8
VPS60	YDR486C	SPG5	P42933	373 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	YGR201C	P42936	225 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	YFL066C	P43538	392 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	TRM9	P49957	279 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	LOT6	Q07923	191 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	FDH1	Q08911	376 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	VIK1	Q12045	647 aa		10.06	□□□□□ -0.8
VPS60	YDR486C	GPH1	P06738	902 aa	Known RBP	10.05	□□□□□ -0.8
VPS60	YDR486C	DBP3	P20447	523 aa	Known RBP	10.05	□□□□□ -0.8
VPS60	YDR486C	PTR2	P32901	601 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	GDH2	P33327	1092 aa	Known RBP	10.05	□□□□□ -0.8
VPS60	YDR486C	RPS27A	P35997	82 aa	Known RBP	10.05	□□□□□ -0.8
VPS60	YDR486C	RPS27B	P38711	82 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	FAA3	P39002	694 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	GIP2	P40036	548 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	YIL152W	P40455	235 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	BNA3	P47039	444 aa	Known RBP	10.05	□□□□□ -0.8
VPS60	YDR486C	TIM54	P47045	478 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	GPI8	P49018	411 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	GUP2	Q08929	609 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	SFM1	Q12314	213 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	IRA2	P19158	3079 aa		10.05	□□□□□ -0.8
VPS60	YDR486C	RHO1	P06780	209 aa	Known RBP	10.04	□□□□□ -0.8
VPS60	YDR486C	RER1	P25560	188 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	GSH1	P32477	678 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	THO1	P40040	218 aa	Known RBP	10.04	□□□□□ -0.8
VPS60	YDR486C	YGR266W	P53326	701 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	YAT1	P80235	687 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	RSC9	Q03124	581 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	RIM13	Q03792	727 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	YMR226C	Q05016	267 aa	Known RBP	10.04	□□□□□ -0.8
VPS60	YDR486C	RSF1	Q05043	376 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	RSA1	Q08932	381 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	TSC13	Q99190	310 aa		10.04	□□□□□ -0.8
VPS60	YDR486C	SEN1	Q00416	2231 aa	Known RBP	10.04	□□□□□ -0.8
VPS60	YDR486C	HFA1	P32874	2273 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	APN1	P22936	367 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	HCS1	P34243	683 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	BIG1	P38813	335 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	GVP36	P40531	326 aa	Known RBP	10.03	□□□□□ -0.8
VPS60	YDR486C	RPS12	P48589	143 aa	Known RBP	10.03	□□□□□ -0.8
VPS60	YDR486C	ELP4	Q02884	456 aa	Known RBP	10.03	□□□□□ -0.8
VPS60	YDR486C	RAD30	Q04049	632 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	KRE28	Q04431	385 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	ARO10	Q06408	635 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	YEH1	Q07804	573 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	SEC39	Q12745	709 aa		10.03	□□□□□ -0.8
VPS60	YDR486C	CDC4	P07834	779 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	AAC3	P18238	307 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	DAL82	P21705	255 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	PTP2	P29461	750 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	LOT5	P34234	306 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	TRR2	P38816	342 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	UME6	P39001	836 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	YRB2	P40517	327 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	CAK1	P43568	368 aa	Predicted RBP	10.02	□□□□□ -0.81
VPS60	YDR486C	ARI1	P53111	347 aa	Known RBP	10.02	□□□□□ -0.81
VPS60	YDR486C	DCP2	P53550	970 aa	Known RBP	10.02	□□□□□ -0.81
VPS60	YDR486C	MRX4	Q12467	430 aa		10.02	□□□□□ -0.81
VPS60	YDR486C	CMK1	P27466	446 aa	Known RBP	10.01	□□□□□ -0.81
VPS60	YDR486C	RPN2	P32565	945 aa	Known RBP	10.01	□□□□□ -0.81
VPS60	YDR486C	KAP122	P32767	1081 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	MRPL6	P32904	214 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	NUF2	P33895	451 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	TEF4	P36008	412 aa	Known RBP	10.01	□□□□□ -0.81
VPS60	YDR486C	MTG2	P38860	518 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	FAR7	P43592	221 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	JHD2	P47156	728 aa	Predicted RBP	10.01	□□□□□ -0.81
VPS60	YDR486C	TWF1	P53250	332 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	YPR091C	Q06833	770 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	MMP1	Q12372	583 aa		10.01	□□□□□ -0.81
VPS60	YDR486C	RPL40A	P0CH08	128 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	RPL40B	P0CH09	128 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	SEC2	P17065	759 aa		10	□□□□□ -0.81
VPS60	YDR486C	THR1	P17423	357 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	CTR86	P25355	563 aa		10	□□□□□ -0.81
VPS60	YDR486C	SAC1	P32368	623 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	CYS4	P32582	507 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	FES1	P38260	290 aa		10	□□□□□ -0.81
VPS60	YDR486C	YHR210C	P38893	341 aa		10	□□□□□ -0.81
VPS60	YDR486C	YAR028W	P39548	234 aa		10	□□□□□ -0.81
VPS60	YDR486C	PDS1	P40316	373 aa	Predicted RBP	10	□□□□□ -0.81
VPS60	YDR486C	UTP25	P40498	721 aa	Known RBP	10	□□□□□ -0.81
VPS60	YDR486C	ROM1	P53046	1155 aa		10	□□□□□ -0.81
VPS60	YDR486C	MTQ1	P53944	314 aa		10	□□□□□ -0.81
VPS60	YDR486C	YPL107W	Q02873	248 aa		10	□□□□□ -0.81
VPS60	YDR486C	NAT4	Q04751	285 aa		10	□□□□□ -0.81
VPS60	YDR486C	YPR174C	Q06616	221 aa	Predicted RBP	10	□□□□□ -0.81
VPS60	YDR486C	YIL046W-A	Q3E7Z4	54 aa		10	□□□□□ -0.81
VPS60	YDR486C	CSF1	Q12150	2958 aa		9.99	□□□□□ -0.81
VPS60	YDR486C	CBS1	P14066	229 aa		9.99	□□□□□ -0.81
VPS60	YDR486C	PET9	P18239	318 aa	Known RBP	9.99	□□□□□ -0.81
VPS60	YDR486C	TEC1	P18412	486 aa		9.99	□□□□□ -0.81
VPS60	YDR486C	MCK1	P21965	375 aa	Known RBP	9.99	□□□□□ -0.81
VPS60	YDR486C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	9.99	□□□□□ -0.81	not detected
VPS60	YDR486C	BCK2	P33306	851 aa		9.99	□□□□□ -0.81

Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms