RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CCNE2O96020 404 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 AMHP03971 560 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 FAM86B2P0C5J1 330 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 GHRP10912 638 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 INSRRP14616 1297 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 PSMA5P28066 241 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 SREBF1P36956 1147 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 CLK2P49760 499 aaKnown RBP11.73□□□□□ -0.53
SCN1A-222ENST00000642141 TFF2Q03403 129 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 STK3Q13188 491 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 GRB10Q13322 594 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 RUFY3Q7L099 469 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 PLA2G4DQ86XP0 818 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 GDPD5Q8WTR4 605 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 AZI2Q9H6S1 392 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 C6orf50Q9HD87 102 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 VPS54Q9P1Q0 977 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 TUBE1Q9UJT0 475 aa11.73□□□□□ -0.53
SCN1A-222ENST00000642141 SPTBN5Q9NRC6 3674 aaKnown RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 BACH1O14867 736 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 PRPF3O43395 683 aaKnown RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 EFCAB14O75071 495 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 IBSPP21815 317 aaPredicted RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 STAT5BP51692 787 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 RCAN1P53805 252 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 TOB2Q14106 344 aaPredicted RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 PLCB4Q15147 1175 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 NTRK3Q16288 839 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 REXO1Q8N1G1 1221 aaKnown RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 C17orf80Q9BSJ5 609 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 IFIH1Q9BYX4 1025 aaKnown RBP11.72□□□□□ -0.53
SCN1A-222ENST00000642141 ZSWIM6Q9HCJ5 1215 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 THEGQ9P2T0 379 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 CYP46A1Q9Y6A2 500 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 PTPRSQ13332 1948 aa11.72□□□□□ -0.53
SCN1A-222ENST00000642141 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.71□□□□□ -0.53
SCN1A-222ENST00000642141 LINC01553A4QN01 128 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 hCG_1984214I3L0E3 225 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 IPO5O00410 1097 aaKnown RBP11.71□□□□□ -0.53
SCN1A-222ENST00000642141 AP3B2Q13367 1082 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 LPIN1Q14693 890 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 PRR16Q569H4 304 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 TJAP1Q5JTD0 557 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 FAM26DQ5JW98 314 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 SWSAP1Q6NVH7 229 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 ZNF713Q8N859 430 aaPredicted RBP11.71□□□□□ -0.53
SCN1A-222ENST00000642141 GJA10Q969M2 543 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 ASB2Q96Q27 587 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 YME1L1Q96TA2 773 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 AGXT2Q9BYV1 514 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 ZMYND12Q9H0C1 365 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 GLT8D2Q9H1C3 349 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 SUGCTQ9HAC7 445 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 INSL6Q9Y581 213 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 CDY2AQ9Y6F7 541 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 CUL9Q8IWT3 2517 aa11.71□□□□□ -0.53
SCN1A-222ENST00000642141 NFASCO94856 1347 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 IGLV3-22A0A075B6J6 115 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 POTEB3A0JP26 581 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 MBLAC1A4D2B0 266 aaPredicted RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 DHX15O43143 795 aaKnown RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 LPXNO60711 386 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 CAND2O75155 1236 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 NLRP5P59047 1200 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 MRPS5P82675 430 aaKnown RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 MKRN4PQ13434 485 aaPredicted RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 TAF2Q6P1X5 1199 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 POTEBQ6S5H4 581 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 RSPH3Q86UC2 560 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 CKAP2LQ8IYA6 745 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 CCDC12Q8WUD4 166 aaPredicted RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 ATXN2LQ8WWM7 1075 aaKnown RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 TOP1MTQ969P6 601 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 AIFM3Q96NN9 605 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 TGS1Q96RS0 853 aaKnown RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 PPP1R16BQ96T49 567 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 ZNF577Q9BSK1 485 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 TSPYL2Q9H2G4 693 aaPredicted RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 AGO3Q9H9G7 860 aaKnown RBP11.7□□□□□ -0.54
SCN1A-222ENST00000642141 PDRG1Q9NUG6 133 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 GINS2Q9Y248 185 aa11.7□□□□□ -0.54
SCN1A-222ENST00000642141 RRN3P2A6NIE6 340 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 ENPP3O14638 875 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 CPLX1O14810 134 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 CYP3A4P08684 503 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 IFNAR1P17181 557 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 KLRC1P26715 233 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 GNA11P29992 359 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 CD52P31358 61 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 KCNQ1P51787 676 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 ERVK-21P61565 698 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 MRPS6P82932 125 aaKnown RBP11.69□□□□□ -0.54
SCN1A-222ENST00000642141 SSRP1Q08945 709 aaKnown RBP11.69□□□□□ -0.54
SCN1A-222ENST00000642141 MGAT3Q09327 533 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 PDXDC2PQ6P474 469 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 ABHD15Q6UXT9 468 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 NIPA1Q7RTP0 329 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 PLPPR4Q7Z2D5 763 aa11.69□□□□□ -0.54
SCN1A-222ENST00000642141 CCDC60Q8IWA6 550 aaPredicted RBP11.69□□□□□ -0.54
SCN1A-222ENST00000642141 FBXL16Q8N461 479 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms