RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 CDC37Q16543 378 aaPredicted RBP15.19■□□□□ 0.02
PHGDH-233ENST00000642021 GBP6Q6ZN66 633 aa15.19■□□□□ 0.02
PHGDH-233ENST00000642021 KLHL7Q8IXQ5 586 aa15.19■□□□□ 0.02
PHGDH-233ENST00000642021 CERS5Q8N5B7 392 aa15.19■□□□□ 0.02
PHGDH-233ENST00000642021 MEIS1O00470 390 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 NR2F2P24468 414 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 ASIC2Q16515 512 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 ZC3H3Q8IXZ2 948 aaKnown RBP15.18■□□□□ 0.02
PHGDH-233ENST00000642021 TBC1D22AQ8WUA7 517 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 KCNMB3Q9NPA1 279 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 FRMD3A2A2Y4 597 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 MPHOSPH10O00566 681 aaKnown RBP15.18■□□□□ 0.02
PHGDH-233ENST00000642021 RAD21O60216 631 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 GCFC2P16383 781 aaKnown RBP15.18■□□□□ 0.02
PHGDH-233ENST00000642021 HOXA7P31268 230 aaPredicted RBP15.18■□□□□ 0.02
PHGDH-233ENST00000642021 CFAP58Q5T655 872 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 USP38Q8NB14 1042 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 CERKQ8TCT0 537 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 ZNF622Q969S3 477 aaKnown RBP eCLIP15.18■□□□□ 0.022e-6■■■□□ 15.2
PHGDH-233ENST00000642021 C8orf37Q96NL8 207 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 FAM169AQ9Y6X4 670 aa15.18■□□□□ 0.02
PHGDH-233ENST00000642021 GOLGB1Q14789 3259 aaKnown RBP15.18■□□□□ 0.02
PHGDH-233ENST00000642021 KDM3AQ9Y4C1 1321 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 EBAG9O00559 213 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 CATSPER3Q86XQ3 398 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 RBM46Q8TBY0 533 aaKnown RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 RNPC3Q96LT9 517 aaKnown RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 DHX36Q9H2U1 1008 aaKnown RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 TMEM59LQ9UK28 342 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 HDAC9Q9UKV0 1011 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 MYH7BA7E2Y1 1941 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 KCNK3O14649 394 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 CETN3O15182 167 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 KRT18P05783 430 aaKnown RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 SCNN1DP51172 638 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 PAK2Q13177 524 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 QRICH1Q2TAL8 776 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 TTC31Q49AM3 519 aaPredicted RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 EFCAB13Q8IY85 973 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 PPM1EQ8WY54 764 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 LUC7LQ9NQ29 371 aaKnown RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 USP40Q9NVE5 1235 aa15.17■□□□□ 0.02
PHGDH-233ENST00000642021 AJAP1Q9UKB5 411 aaPredicted RBP15.17■□□□□ 0.02
PHGDH-233ENST00000642021 NHSQ6T4R5 1651 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 UCHL3P15374 230 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 EPS15P42566 896 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 SPIRE1Q08AE8 756 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 PABPC4Q13310 644 aaKnown RBP eCLIP15.16■□□□□ 0.029e-7■■■■□ 21.6
PHGDH-233ENST00000642021 GIT2Q14161 759 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 ZFPM1Q8IX07 1006 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 LRRC4BQ9NT99 713 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 PCDHA1Q9Y5I3 950 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.16■□□□□ 0.02
PHGDH-233ENST00000642021 SNAP25P60880 206 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 ERVK-9P63128 1117 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 GUCY1A3Q02108 690 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 EDRF1Q3B7T1 1238 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 GPATCH4Q5T3I0 446 aaKnown RBP15.16■□□□□ 0.02
PHGDH-233ENST00000642021 TADA2BQ86TJ2 420 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 NGLY1Q96IV0 654 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 ANO3Q9BYT9 981 aa15.16■□□□□ 0.02
PHGDH-233ENST00000642021 A0A087WUV0 522 aaPredicted RBP15.15■□□□□ 0.02
PHGDH-233ENST00000642021 FAM196BA6NMK8 535 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 MEIS2O14770 477 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 ZEB2O60315 1214 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 AKAP3O75969 853 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 SERPINB2P05120 415 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 MYBP10242 640 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 PON1P27169 355 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 ECHS1P30084 290 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 LIG3P49916 1009 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 PPARDQ03181 441 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 NFIAQ12857 509 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 RPS6KA1Q15418 735 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 DDX42Q86XP3 938 aaKnown RBP eCLIP15.15■□□□□ 0.023e-6■■■□□ 16.1
PHGDH-233ENST00000642021 MICALL1Q8N3F8 863 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 MREGQ8N565 214 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 RBM17Q96I25 401 aaKnown RBP15.15■□□□□ 0.02
PHGDH-233ENST00000642021 SWAP70Q9UH65 585 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 NAGPAQ9UK23 515 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 RSPH10B2B2RC85 870 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 KIF4AO95239 1232 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 RSPH10BP0C881 870 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 SPATA31C1P0DKV0 1188 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 ZBTB48P10074 688 aaPredicted RBP15.15■□□□□ 0.02
PHGDH-233ENST00000642021 CASP4P49662 377 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 KCNA1Q09470 495 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 VPS72Q15906 364 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 SFR1Q86XK3 245 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 LRRC57Q8N9N7 239 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 SPAG5Q96R06 1193 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 REEP2Q9BRK0 252 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 AP1M1Q9BXS5 423 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 IKZF4Q9H2S9 585 aa15.15■□□□□ 0.02
PHGDH-233ENST00000642021 ARMCX3Q9UH62 379 aaPredicted RBP15.15■□□□□ 0.02
PHGDH-233ENST00000642021 BBOX1O75936 387 aa15.14■□□□□ 0.01
PHGDH-233ENST00000642021 TAL1P17542 331 aaPredicted RBP15.14■□□□□ 0.01
PHGDH-233ENST00000642021 POLD1P28340 1107 aa15.14■□□□□ 0.01
PHGDH-233ENST00000642021 PRR16Q569H4 304 aa15.14■□□□□ 0.01
PHGDH-233ENST00000642021 GJB7Q6PEY0 223 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms