RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PDCLQ13371 301 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 MMS22LQ6ZRQ5 1243 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 SLFN12Q8IYM2 578 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 SH2D3CQ8N5H7 860 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 PBKQ96KB5 322 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 HDAC9Q9UKV0 1011 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 TRAF3IP3Q9Y228 551 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 CYP3A7-CYP3A51PA0A087WV96 503 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 RAD51CO43502 376 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 CYP3A7P24462 503 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 PTK2Q05397 1052 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 IRF2BP2Q7Z5L9 587 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 TBC1D16Q8TBP0 767 aa22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 RBM17Q96I25 401 aaKnown RBP22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 DHX36Q9H2U1 1008 aaKnown RBP22.05■■□□□ 1.12
SYNGAP1-227ENST00000638142 ATP8B3O60423 1300 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ATXN2Q99700 1313 aaKnown RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 TAF1LQ8IZX4 1826 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ERLIN2O94905 339 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ANXA13P27216 316 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 SLC16A2P36021 539 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 HSPA9P38646 679 aaKnown RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 GUCY2FP51841 1108 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ENOX2Q16206 610 aaKnown RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ARSHQ5FYA8 562 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 KCTD16Q68DU8 428 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 TTC19Q6DKK2 380 aaPredicted RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 B4GALNT4Q76KP1 1039 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 MBOAT7Q96N66 472 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 TAF1DQ9H5J8 278 aaPredicted RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ARMCX3Q9UH62 379 aaPredicted RBP22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 KIF13BQ9NQT8 1826 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 NDUFAB1O14561 156 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 KIF4AO95239 1232 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 DPY19L2P1Q6NXN4 242 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 MOXD1Q6UVY6 613 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 SPAG5Q96R06 1193 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 ISCUQ9H1K1 167 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 POLLQ9UGP5 575 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 SUGT1Q9Y2Z0 365 aa22.04■■□□□ 1.12
SYNGAP1-227ENST00000638142 KCNK3O14649 394 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 MED24O75448 989 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 BBOX1O75936 387 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 UCHL3P15374 230 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 ZNF571Q7Z3V5 609 aaPredicted RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 SPATS2Q86XZ4 545 aaKnown RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 ACTRT1Q8TDG2 376 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 HMGB1P1B2RPK0 211 aaPredicted RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 AFPP02771 609 aaKnown RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 SHMT1P34896 483 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 CALR3Q96L12 384 aaKnown RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 ATP6V1G3Q96LB4 118 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 ZHX3Q9H4I2 956 aa22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 DDX4Q9NQI0 724 aaKnown RBP22.03■■□□□ 1.12
SYNGAP1-227ENST00000638142 NR1D1P20393 614 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 PRKCIP41743 596 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 ATP1A2P50993 1020 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 CUL1Q13616 776 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 VPS72Q15906 364 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 KCTD1Q719H9 257 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 SCFD2Q8WU76 684 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 ANO3Q9BYT9 981 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 RABEP2Q9H5N1 569 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L15C9J2P7 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L13C9JLJ4 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L11C9JVI0 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L18D6R9N7 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L22D6RA61 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L17D6RBQ6 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L19D6RCP7 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L20D6RJB6 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 RNASE9P60153 205 aaKnown RBP22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L24Q0WX57 530 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 EXOC3L4Q17RC7 722 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 KNOP1Q1ED39 458 aaKnown RBP22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 USP17L6PQ6QN14 398 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 KLHL7Q8IXQ5 586 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 LRRC57Q8N9N7 239 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 RNPC3Q96LT9 517 aaKnown RBP22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 MXD3Q9BW11 206 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 NAGPAQ9UK23 515 aa22.02■■□□□ 1.12
SYNGAP1-227ENST00000638142 POTEFA5A3E0 1075 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 FLOT1O75955 427 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 POTEIP0CG38 1075 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 ACTN1P12814 892 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 SLC9A1P19634 815 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 GTF2IP78347 998 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 POTEGQ6S5H5 508 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 POTEEQ6S8J3 1075 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 LRIG3Q6UXM1 1119 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 ERMNQ8TAM6 284 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 FBXL5Q9UKA1 691 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 PDXKO00764 312 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 CALUO43852 315 aaPredicted RBP22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 TOM1O60784 492 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 LSP1P33241 339 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 LIG3P49916 1009 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 CASP5P51878 434 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 GIT2Q14161 759 aa22.01■■□□□ 1.11
SYNGAP1-227ENST00000638142 EPM2AIP1Q7L775 607 aaPredicted RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms