RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 KCNC3Q14003 757 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 FBXO47Q5MNV8 452 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 ASTLQ6HA08 431 aaPredicted RBP18.94■□□□□ 0.62
CLN3-264ENST00000637985 TAF2Q6P1X5 1199 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 RUFY4Q6ZNE9 571 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 RTN4RL1Q86UN2 441 aaPredicted RBP18.94■□□□□ 0.62
CLN3-264ENST00000637985 MAP3K20Q9NYL2 800 aaKnown RBP18.94■□□□□ 0.62
CLN3-264ENST00000637985 SORCS3Q9UPU3 1222 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 NRCAMQ92823 1304 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 NCOR2Q9Y618 2525 aa18.94■□□□□ 0.62
CLN3-264ENST00000637985 UBE3AQ05086 875 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 SYCE2Q6PIF2 218 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 DGKHQ86XP1 1220 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 TRIM50Q86XT4 487 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 NPAS4Q8IUM7 802 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 PLEKHM2Q8IWE5 1019 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 MICAL1Q8TDZ2 1067 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 ZFP91Q96JP5 570 aaPredicted RBP18.93■□□□□ 0.62
CLN3-264ENST00000637985 FAM227BQ96M60 508 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 GPR20Q99678 358 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 JMJD4Q9H9V9 463 aa18.93■□□□□ 0.62
CLN3-264ENST00000637985 KMT2BQ9UMN6 2715 aaPredicted RBP18.92■□□□□ 0.62
CLN3-264ENST00000637985 A0A0D9SFI3 127 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 PPFIA3O75145 1194 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 CLCN5P51795 746 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 PAN2Q504Q3 1202 aaKnown RBP18.92■□□□□ 0.62
CLN3-264ENST00000637985 ANKRD54Q6NXT1 300 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 METTL7BQ6UX53 244 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 TSHZ1Q6ZSZ6 1077 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 RILPL2Q969X0 211 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 RMDN1Q96DB5 314 aa18.92■□□□□ 0.62
CLN3-264ENST00000637985 AGO3Q9H9G7 860 aaKnown RBP18.92■□□□□ 0.62
CLN3-264ENST00000637985 ZNF215Q9UL58 517 aaPredicted RBP18.92■□□□□ 0.62
CLN3-264ENST00000637985 KRT37O76014 449 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 PCP11498 1178 aaKnown RBP18.91■□□□□ 0.62
CLN3-264ENST00000637985 SP100P23497 879 aaPredicted RBP18.91■□□□□ 0.62
CLN3-264ENST00000637985 CCND2P30279 289 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 MFAP1P55081 439 aaKnown RBP18.91■□□□□ 0.62
CLN3-264ENST00000637985 NMIQ13287 307 aaPredicted RBP18.91■□□□□ 0.62
CLN3-264ENST00000637985 ASPRV1Q53RT3 343 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 PNMA1Q8ND90 353 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 AMNQ9BXJ7 453 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 VAT1LQ9HCJ6 419 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 NR2E1Q9Y466 385 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 ZMYM6O95789 1325 aa18.91■□□□□ 0.62
CLN3-264ENST00000637985 TPRP12270 2363 aaKnown RBP18.91■□□□□ 0.62
CLN3-264ENST00000637985 SRGAP2BP0DMP2 458 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 HOXA13P31271 388 aaPredicted RBP18.9■□□□□ 0.62
CLN3-264ENST00000637985 TECP42680 631 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 ERVFC1P60507 584 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 NEDD9Q14511 834 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 MFSD6Q6ZSS7 791 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 CYFIP1Q7L576 1253 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 DGLUCYQ7Z3D6 616 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 RSPH3Q86UC2 560 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 SAMD3Q8N6K7 520 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 RASGRP4Q8TDF6 673 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 ZKSCAN3Q9BRR0 538 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 FTHL17Q9BXU8 183 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 SMOC2Q9H3U7 446 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 TELO2Q9Y4R8 837 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 CDY2AQ9Y6F7 541 aa18.9■□□□□ 0.62
CLN3-264ENST00000637985 DOCK5Q9H7D0 1870 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 SPATA31C2B4DYI2 1134 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 FSCN2O14926 492 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 DHX16O60231 1041 aaKnown RBP18.89■□□□□ 0.61
CLN3-264ENST00000637985 STAG3L1P0CL83 205 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 SDSP20132 328 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 CD52P31358 61 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 GATMP50440 423 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 HAND2P61296 217 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 UTP14CQ5TAP6 766 aaKnown RBP18.89■□□□□ 0.61
CLN3-264ENST00000637985 PDE12Q6L8Q7 609 aaKnown RBP18.89■□□□□ 0.61
CLN3-264ENST00000637985 PCDHB12Q9Y5F1 795 aa18.89■□□□□ 0.61
CLN3-264ENST00000637985 MBLAC1A4D2B0 266 aaPredicted RBP18.88■□□□□ 0.61
CLN3-264ENST00000637985 HOXB8P17481 243 aaPredicted RBP18.88■□□□□ 0.61
CLN3-264ENST00000637985 SEMA3FQ13275 785 aa18.88■□□□□ 0.61
CLN3-264ENST00000637985 ZNF589Q86UQ0 364 aaPredicted RBP18.88■□□□□ 0.61
CLN3-264ENST00000637985 DNAJB3Q8WWF6 145 aa18.88■□□□□ 0.61
CLN3-264ENST00000637985 INPP4AQ96PE3 977 aaPredicted RBP18.88■□□□□ 0.61
CLN3-264ENST00000637985 APOL5Q9BWW9 433 aa18.88■□□□□ 0.61
CLN3-264ENST00000637985 TSHZ2Q9NRE2 1034 aa18.88■□□□□ 0.61
CLN3-264ENST00000637985 SQORQ9Y6N5 450 aa18.88■□□□□ 0.61
CLN3-264ENST00000637985 C2CD4DB7Z1M9 353 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 HIP1O00291 1037 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 PPP1R11O60927 126 aaPredicted RBP18.87■□□□□ 0.61
CLN3-264ENST00000637985 FGF18O76093 207 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 FRYLO94915 3013 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 SCG2P13521 617 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 MRPS9P82933 396 aaKnown RBP18.87■□□□□ 0.61
CLN3-264ENST00000637985 GNPTABQ3T906 1256 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 TBC1D10CQ8IV04 446 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 ESR2Q92731 530 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 KAT14Q9H8E8 782 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 TUBE1Q9UJT0 475 aa18.87■□□□□ 0.61
CLN3-264ENST00000637985 PARP1P09874 1014 aaKnown RBP18.86■□□□□ 0.61
CLN3-264ENST00000637985 MRPS6P82932 125 aaKnown RBP18.86■□□□□ 0.61
CLN3-264ENST00000637985 PPFIA1Q13136 1202 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 MARCH8Q5T0T0 291 aa18.86■□□□□ 0.61
CLN3-264ENST00000637985 MTMR8Q96EF0 704 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms