RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 LUC7L2Q9Y383 392 aaKnown RBP20.37■□□□□ 0.85
CLN3-263ENST00000637871 VWA5AO00534 786 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 GNA14O95837 355 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 ALDH1A1P00352 501 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 FCER1AP12319 257 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 IDEP14735 1019 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 MTIF2P46199 727 aaKnown RBP20.36■□□□□ 0.85
CLN3-263ENST00000637871 TUBB2AQ13885 445 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 FAM26FQ5R3K3 315 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 CCDC174Q6PII3 467 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 SYT10Q6XYQ8 523 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 PPP4R3CPQ6ZMV5 832 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 DYMQ7RTS9 669 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 PRPF38AQ8NAV1 312 aaKnown RBP20.36■□□□□ 0.85
CLN3-263ENST00000637871 CNOT6LQ96LI5 555 aaKnown RBP20.36■□□□□ 0.85
CLN3-263ENST00000637871 TUBB2BQ9BVA1 445 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 SLC39A2Q9NP94 309 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 ABHD10Q9NUJ1 306 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 RBPJLQ9UBG7 517 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 KIAA1024Q9UPX6 916 aa20.36■□□□□ 0.85
CLN3-263ENST00000637871 OPLAHO14841 1288 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 TLR2O60603 784 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 SLU7O95391 586 aaKnown RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 PRKCSHP14314 528 aaPredicted RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 SPIRE1Q08AE8 756 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 TBC1D8BQ0IIM8 1120 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 TRIM65Q6PJ69 517 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 CREBRFQ8IUR6 639 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 LENG9Q96B70 501 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 CEP63Q96MT8 703 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 SEMA6BQ9H3T3 888 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 A0A1W2PQJ5 194 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 FRMD3A2A2Y4 597 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 KRT9P35527 623 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 FXR1P51114 621 aaKnown RBP eCLIP20.35■□□□□ 0.85
CLN3-263ENST00000637871 SETQ01105 290 aaPredicted RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 COASYQ13057 564 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 PLS1Q14651 629 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 TMEM132BQ14DG7 1078 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 LBX2Q6XYB7 198 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 KCNK18Q7Z418 384 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 MCF2L2Q86YR7 1114 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 CPXCR1Q8N123 301 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 SYT2Q8N9I0 419 aaPredicted RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 ZNF397Q8NF99 534 aaPredicted RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 REPS2Q8NFH8 660 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 CPLX3Q8WVH0 158 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 BEGAINQ9BUH8 593 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 NOC4LQ9BVI4 516 aaKnown RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 RAVER2Q9HCJ3 691 aaKnown RBP20.35■□□□□ 0.85
CLN3-263ENST00000637871 TUFT1Q9NNX1 390 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 HOXC10Q9NYD6 342 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 ADGRG1Q9Y653 693 aa20.35■□□□□ 0.85
CLN3-263ENST00000637871 SMCHD1A6NHR9 2005 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 FKBP3Q00688 224 aaKnown RBP20.34■□□□□ 0.85
CLN3-263ENST00000637871 GOLGA8FQ08AF8 430 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 GOLGA8DPQ0D2H9 430 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 ECM1Q16610 540 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 MAN2A1Q16706 1144 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 Q3C1V9 767 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 DNAJC7Q99615 494 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 EDEM3Q9BZQ6 932 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 SLC38A10Q9HBR0 1119 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 ZNHIT6Q9NWK9 470 aaKnown RBP20.34■□□□□ 0.85
CLN3-263ENST00000637871 MYO1AQ9UBC5 1043 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 ADAMTS5Q9UNA0 930 aa20.34■□□□□ 0.85
CLN3-263ENST00000637871 MYPNQ86TC9 1320 aa20.33■□□□□ 0.85
CLN3-263ENST00000637871 MSH4O15457 936 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 BCRP11274 1271 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 CYP11B2P19099 503 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 GHRHRQ02643 423 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 C17orf99Q6UX52 265 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 GPBP1Q86WP2 473 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 ANKRD7Q92527 254 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 WDR11Q9BZH6 1224 aa20.33■□□□□ 0.84
CLN3-263ENST00000637871 ZNF536O15090 1300 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 FAM86B1E9PN63 330 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 COBLO75128 1261 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 ICAM1P05362 532 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 FAM86B2P0C5J1 330 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 SLC12A3P55017 1021 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 ERVK-9P63128 1117 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 ERVK-24P63145 666 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 CDK17Q00537 523 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 PTPN21Q16825 1174 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 NIPA1Q7RTP0 329 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 CATSPER3Q86XQ3 398 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 AGBL1Q96MI9 1066 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 SAGE1Q9NXZ1 904 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 DNAI1Q9UI46 699 aa20.32■□□□□ 0.84
CLN3-263ENST00000637871 ZNF214Q9UL59 606 aaPredicted RBP20.32■□□□□ 0.84
CLN3-263ENST00000637871 IGLV3-22A0A075B6J6 115 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 POTEB3A0JP26 581 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 PES1O00541 588 aaKnown RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 ZBED4O75132 1171 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 MED24O75448 989 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 CFBP00751 764 aa20.31■□□□□ 0.84
CLN3-263ENST00000637871 KRT18P05783 430 aaKnown RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 HSPA1AP0DMV8 641 aaKnown RBP20.31■□□□□ 0.84
CLN3-263ENST00000637871 HSPA1BP0DMV9 641 aaKnown RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms