RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	DKC1	O60832	514 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	ATG7	O95352	703 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	SSB	P05455	408 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	HOXC6	P09630	235 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	SLC12A3	P55017	1021 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	ACTR2	P61160	394 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	PSMC5	P62195	406 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	ASIC1	P78348	528 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	DPCR1	Q3MIW9	517 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	MIS18BP1	Q6P0N0	1132 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	CCDC62	Q6P9F0	684 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	ABHD15	Q6UXT9	468 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	CYFIP1	Q7L576	1253 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	EEPD1	Q7L9B9	569 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	GPBP1	Q86WP2	473 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	BANK1	Q8NDB2	785 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	SCFD2	Q8WU76	684 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	USP6NL	Q92738	828 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	DDX12P	Q92771	950 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	LXN	Q9BS40	222 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	TINF2	Q9BSI4	451 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	BCAS3	Q9H6U6	928 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	CBX8	Q9HC52	389 aa		13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	DDX41	Q9UJV9	622 aa	Known RBP	13.13	□□□□□ -0.31
CLN6-223	ENST00000637823	RHOBTB3	O94955	611 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	BMP6	P22004	513 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	UBA1	P22314	1058 aa	Known RBP	13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	PSMD2	Q13200	908 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	TTLL4	Q14679	1199 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	KMT5B	Q4FZB7	885 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	ZNF658	Q5TYW1	1059 aa	Predicted RBP	13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	UNC13D	Q70J99	1090 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	C4orf19	Q8IY42	314 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	RNF214	Q8ND24	703 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	NPLOC4	Q8TAT6	608 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	PIGO	Q8TEQ8	1089 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	DNAJC19	Q96DA6	116 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	CFHR5	Q9BXR6	569 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	MLXIP	Q9HAP2	919 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	DBR1	Q9UK59	544 aa	Known RBP	13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	GJD2	Q9UKL4	321 aa		13.12	□□□□□ -0.31
CLN6-223	ENST00000637823	SMTNL1	A8MU46	457 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	TNPO2	O14787	897 aa	Known RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	FARP2	O94887	1054 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	GGPS1	O95749	300 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	SNAI1	O95863	264 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	SUPT20HL2	P0C7V6	817 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	TXN	P10599	105 aa	Known RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	CYP11B2	P19099	503 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	RGS2	P41220	211 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	FCGRT	P55899	365 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	IRF5	Q13568	498 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	IQCB1	Q15051	598 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	LY6K	Q17RY6	165 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	ARSH	Q5FYA8	562 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	CELF3	Q5SZQ8	465 aa	Known RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	SWSAP1	Q6NVH7	229 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	TAPT1	Q6NXT6	567 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	METTL7B	Q6UX53	244 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	DYM	Q7RTS9	669 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	FBXO16	Q8IX29	292 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	CCDC65	Q8IXS2	484 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	SOCS4	Q8WXH5	440 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	ATP6V0A1	Q93050	837 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	BHMT2	Q9H2M3	363 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	ABHD16B	Q9H3Z7	469 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	ANKEF1	Q9NU02	776 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	EXOC1	Q9NV70	894 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	KCND2	Q9NZV8	630 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	ARID2	Q68CP9	1835 aa		13.11	□□□□□ -0.31
CLN6-223	ENST00000637823	GSTTP1	A0A1W2PQM5	241 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	ARHGEF35	A5YM69	484 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	BECN2	A8MW95	431 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	IKBKB	O14920	756 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	ZBTB39	O15060	712 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	ARIH2	O95376	493 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	KRT18	P05783	430 aa	Known RBP	13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	ERCC5	P28715	1186 aa	Predicted RBP	13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	VEGFB	P49765	207 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	OLFML2B	Q68BL8	750 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	IQSEC1	Q6DN90	963 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	RINT1	Q6NUQ1	792 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	OTUD6A	Q7L8S5	288 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	LUZP1	Q86V48	1076 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	DHX37	Q8IY37	1157 aa	Known RBP	13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	SEPT1	Q8WYJ6	367 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	KATNBL1	Q9H079	304 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	PDGFC	Q9NRA1	345 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	PANK4	Q9NVE7	773 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	GABBR1	Q9UBS5	961 aa		13.1	□□□□□ -0.31
CLN6-223	ENST00000637823	IGKV6D-21	A0A0A0MT36	114 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	PPP1R3G	B7ZBB8	358 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	GOLGA6L19	H0YKK7	550 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	BACH1	O14867	736 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	IDE	P14735	1019 aa		13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	YWHAB	P31946	246 aa	Known RBP	13.09	□□□□□ -0.31
CLN6-223	ENST00000637823	PPP1R2	P41236	205 aa		13.09	□□□□□ -0.31

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