RNA–Protein interactions for RNA: ENST00000637223.1

CLN6-218, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-218ENST00000637223 LGR5O75473 907 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 PSAPP07602 524 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 PDIA4P13667 645 aaKnown RBP19.38■□□□□ 0.69
CLN6-218ENST00000637223 MARK3P27448 753 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 MAGEA10P43363 369 aaPredicted RBP19.38■□□□□ 0.69
CLN6-218ENST00000637223 PTGDRQ13258 359 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 SNX17Q15036 470 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 SWSAP1Q6NVH7 229 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 EMSYQ7Z589 1322 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 CCDC60Q8IWA6 550 aaPredicted RBP19.38■□□□□ 0.69
CLN6-218ENST00000637223 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN6-218ENST00000637223 C4orf32Q8N8J7 132 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 SMARCAD1Q9H4L7 1026 aa19.38■□□□□ 0.69
CLN6-218ENST00000637223 TTC12Q9H892 705 aaPredicted RBP19.38■□□□□ 0.69
CLN6-218ENST00000637223 ZNF215Q9UL58 517 aaPredicted RBP19.38■□□□□ 0.69
CLN6-218ENST00000637223 HAS3O00219 553 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 EML1O00423 815 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 PQBP1O60828 265 aaKnown RBP19.37■□□□□ 0.69
CLN6-218ENST00000637223 SFNP31947 248 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 STAT5BP51692 787 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 JAK3P52333 1124 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 PPP2R5CQ13362 524 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 NCAPH2Q6IBW4 605 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 SLC43A3Q8NBI5 491 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 FTOQ9C0B1 505 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN6-218ENST00000637223 ZNF302Q9NR11 478 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 GABBR1Q9UBS5 961 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 PCDHA12Q9UN75 941 aa19.37■□□□□ 0.69
CLN6-218ENST00000637223 IGKV6D-21A0A0A0MT36 114 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 F13A1P00488 732 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 CDK7P50613 346 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 TLE2Q04725 743 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 SPIRE1Q08AE8 756 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 FOXD4L6Q3SYB3 417 aaPredicted RBP19.36■□□□□ 0.69
CLN6-218ENST00000637223 C1orf53Q5VUE5 145 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 FAM160B1Q5W0V3 765 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 PDXDC2PQ6P474 469 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 FOXD4L3Q6VB84 417 aaPredicted RBP19.36■□□□□ 0.69
CLN6-218ENST00000637223 C7orf31Q8N865 590 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 UBE2OQ9C0C9 1292 aaKnown RBP19.36■□□□□ 0.69
CLN6-218ENST00000637223 RNPEPQ9H4A4 650 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 ERAP1Q9NZ08 941 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 HDAC6Q9UBN7 1215 aa19.36■□□□□ 0.69
CLN6-218ENST00000637223 DAXXQ9UER7 740 aaPredicted RBP19.36■□□□□ 0.69
CLN6-218ENST00000637223 TECP42680 631 aa19.35■□□□□ 0.69
CLN6-218ENST00000637223 SF3A1Q15459 793 aaKnown RBP19.35■□□□□ 0.69
CLN6-218ENST00000637223 NFRKBQ6P4R8 1299 aa19.35■□□□□ 0.69
CLN6-218ENST00000637223 PLPPR4Q7Z2D5 763 aa19.35■□□□□ 0.69
CLN6-218ENST00000637223 RDM1Q8NG50 284 aa19.35■□□□□ 0.69
CLN6-218ENST00000637223 CLIC4Q9Y696 253 aa19.35■□□□□ 0.69
CLN6-218ENST00000637223 MROH7Q68CQ1 1323 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 POTEMA6NI47 508 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 BRD1O95696 1058 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 SMIM10L2AP0DMW4 78 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 SMIM10L2BP0DMW5 78 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 ATP2C1P98194 919 aaPredicted RBP19.34■□□□□ 0.69
CLN6-218ENST00000637223 CEBPZQ03701 1054 aaKnown RBP19.34■□□□□ 0.69
CLN6-218ENST00000637223 PLCB4Q15147 1175 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 UGCGQ16739 394 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 TRMT1LQ7Z2T5 733 aaKnown RBP19.34■□□□□ 0.69
CLN6-218ENST00000637223 BANK1Q8NDB2 785 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 AFAP1L1Q8TED9 768 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 TRPV6Q9H1D0 765 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 TRMT13Q9NUP7 481 aaKnown RBP19.34■□□□□ 0.69
CLN6-218ENST00000637223 TRPC6Q9Y210 931 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 ZDHHC9Q9Y397 364 aa19.34■□□□□ 0.69
CLN6-218ENST00000637223 IGSF9BQ9UPX0 1349 aa19.33■□□□□ 0.69
CLN6-218ENST00000637223 DCDC2CA8MYV0 355 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 LAD1O00515 517 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 B4GALT4O60513 344 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 EPHA7Q15375 998 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 TMEM266Q2M3C6 531 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 GDF6Q6KF10 455 aaPredicted RBP19.33■□□□□ 0.68
CLN6-218ENST00000637223 ANKRD33Q7Z3H0 272 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 FAM126BQ8IXS8 530 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 CKAP2LQ8IYA6 745 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 USP28Q96RU2 1077 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 SEZ6LQ9BYH1 1024 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 GTF2IRD1Q9UHL9 959 aa19.33■□□□□ 0.68
CLN6-218ENST00000637223 MAFBQ9Y5Q3 323 aaPredicted RBP19.33■□□□□ 0.68
CLN6-218ENST00000637223 TLR3O15455 904 aaKnown RBP19.32■□□□□ 0.68
CLN6-218ENST00000637223 ZNF862O60290 1169 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 ATP4AP20648 1035 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 SLC26A2P50443 739 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 ZNF200P98182 395 aaPredicted RBP19.32■□□□□ 0.68
CLN6-218ENST00000637223 PTPN11Q06124 597 aaPredicted RBP19.32■□□□□ 0.68
CLN6-218ENST00000637223 PPFIA1Q13136 1202 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 HIC1Q14526 733 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 IL17AQ16552 155 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 DTHD1Q6ZMT9 781 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 SESTD1Q86VW0 696 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 DYDC2Q96IM9 177 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 TOX2Q96NM4 488 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 IPO9Q96P70 1041 aaKnown RBP19.32■□□□□ 0.68
CLN6-218ENST00000637223 PRDM5Q9NQX1 630 aaPredicted RBP19.32■□□□□ 0.68
CLN6-218ENST00000637223 SETD4Q9NVD3 440 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 RGL1Q9NZL6 768 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 CEP131Q9UPN4 1083 aa19.32■□□□□ 0.68
CLN6-218ENST00000637223 POTEB3A0JP26 581 aa19.31■□□□□ 0.68
CLN6-218ENST00000637223 C17orf102A2RUQ5 167 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms